Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq23 192 5e-44 >seq23 Length=62282865 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 35821205 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 35821264 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 35821265 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 35821324 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||||| |||||||| ||||||||||| || Sbjct 35821325 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 35821365 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 35821365 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 35821306 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||| Sbjct 35821305 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 35821246 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 35821245 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 35821205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| || |||||||| ||||| || ||||||| | Sbjct 35818861 CCACCAACGCTAAGGAACTGTCTTCCAAAGGAGTGAAGATTTGGGATGCCAACGGGTCCC 35818920 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| |||| ||| ||| ||| | | | |||| || |||||||| || Sbjct 35818921 GAGACTTCTTGGATGGCTTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTGGGCCCAGTT 35818979 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 35818980 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 35819014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || |||||||| || |||| | | Sbjct 35819014 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATC-CCCTTCAGC 35818956 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| |||| |||||||| ||||||| || ||||| ||||| Sbjct 35818955 TCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATCTT 35818896 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| || ||| || || ||||| | ||| |||| Sbjct 35818895 CACTCCTTTGGAAGACAGTTCCTTAGCGTTGGTGG 35818861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231772471520