Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1 183 3e-41 seq23 113 4e-20 seq3 113 4e-20 >seq1 Length=275406953 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 175310421 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 175310480 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 175310481 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 175310540 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || || |||||||| || || ||||| ||| Sbjct 175310541 ATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTGGAAGAT 175310600 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 175310601 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 175310660 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 175310661 TGCCTCACTCTCTTTG 175310676 >seq23 Length=62282865 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 61779018 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 61778959 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 61778958 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 61778899 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 61778898 ATCGCCCTGTGGATGACCGA 61778879 >seq3 Length=223996068 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || ||||| ||||||| |||| ||| | |||| | || | | Sbjct 153890717 TTTGGATAGTGGGAGGAAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 153890659 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| |||| || ||||| ||||||||| || ||||||||| Sbjct 153890658 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 153890599 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || | || || |||| || | |||| |||||||||||| |||| || || || Sbjct 153890598 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAC 153890539 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| ||||||||| || | |||| Sbjct 153890538 GAAAAAGGCATTAAGTACAAATTTGAAGCATATGAAAAGAACAATTAAT 153890490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414449188850824