Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 seq13 84.2 2e-11 >seq11 Length=62170480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 32766196 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32766255 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || || || ||| ||| || || | | Sbjct 32766256 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 32766315 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | |||||| |||| ||||| | || || ||||| ||||| || Sbjct 32766316 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 32766375 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 32766376 GAAGATTTGCATTTTGAC 32766393 >seq13 Length=82951069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || ||||| || || | || || || | || || |||| | Sbjct 49683494 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTCT 49683553 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||| | || || |||||||||||||| |||||| | || ||| | ||| |||||| Sbjct 49683554 TTGCTGGAGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCCTCGTCTTGGATTTT 49683612 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | ||| || || | || || | || ||| | Sbjct 49683613 GGCTTTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCAT 49683672 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 ||| || || |||||||| ||||||| | |||| Sbjct 49683673 CAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 49683705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516985014458