Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq27 123 2e-23 seq2 120 3e-22 seq3 107 2e-18 seq9 95.1 1e-14 >seq27 Length=135185801 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 37567277 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 37567218 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| |||||||| || || || || || ||||| | |||| Sbjct 37567217 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 37567158 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTG 31925 ||| || |||||||| ||||| |||| ||||||||||||| Sbjct 37567157 AGATTACAGAGGAAATGTTGGTGTTGTCTTGTTTAATTTTG 37567117 >seq2 Length=248966461 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 232007213 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 232007154 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| ||||| ||||||| |||||||| || || || || || ||||| | |||| Sbjct 232007153 TCCTCATTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 232007094 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTG 31925 ||| || |||||||| ||||| |||| ||||||||||||| Sbjct 232007093 AGATTACAGAGGAAATGTTGGTGTTGTCTTGTTTAATTTTG 232007053 >seq3 Length=223996068 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 19112515 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 19112456 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 19112455 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 19112396 Query 4692 AC 4693 || Sbjct 19112395 AC 19112394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 19110829 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 19110770 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||| || || | |||||||| Sbjct 19110769 ATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTC 19110726 >seq9 Length=94583238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||||| || || ||||| || || || || ||||||||||||||||| || || Sbjct 74655152 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 74655096 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| ||||| |||| || || | |||||| || |||||||| || | ||| || Sbjct 74655095 ATGTGAGAGATAAAATACTTCTCTTCCGACTTAAGCTTGTTCCAGTGAGGAAGATCCTTT 74655036 Query 5040 GTTAAATCAAC 5050 | ||||||||| Sbjct 74655035 GATAAATCAAC 74655025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427021151290178