Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 132 7e-26 seq27 102 1e-16 seq3 86.0 9e-12 seq9 84.2 3e-11 >seq15 Length=80783214 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 49181660 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 49181719 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 49181720 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 49181779 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 49181780 TTTCTTATACCAT 49181792 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || | Sbjct 49205809 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAAACGGCAATCCTTGCTGCCA 49205868 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| | || || || ||| ||| Sbjct 49205869 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 49205928 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | ||| ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 49205929 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 49205983 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 49201564 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 49201623 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 49201624 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 49201683 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 49201684 ATGTGTTGTGGTCTTTCAGCC 49201704 >seq27 Length=135185801 Score = 102 bits (112), Expect = 1e-16 Identities = 244/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 37566980 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTGAACTTCC 37567037 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || || ||||| | || Sbjct 37567038 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTTGATCACTGTTTTTG 37567097 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| || ||| | || | || |||| | ||||| |||||| Sbjct 37567098 ACTTCAAACTTCTCTTTGTCAAAATTAAACAAGACAACACCAACATTTCCTCTGTAATCT 37567157 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| | || ||||| | |||| Sbjct 37567158 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 37567217 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || | ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 37567218 GCCACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 37567272 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| || || || || || || || |||||||| | || || || || Sbjct 37567273 GC-ACTTTCTCCATCGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCG 37567331 Query 46225 GC 46226 || Sbjct 37567332 GC 37567333 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | || |||||||| ||||| | ||| || ||| Sbjct 37712045 TCCAGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACACCCTC 37712104 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | |||||| || |||| || | | || || ||||| || ||||||| | || | Sbjct 37712105 TATTTCAGGACAAAATATCTATTCACAAATGAGCTGAGCAGTTTGATCACCCTTTTTGAC 37712164 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| | | || ||||| | |||||||||||||| Sbjct 37712165 TTCAAACCTTTCTTTGCCAAAATTACATAACACAACACCAATGCTTCCTCTATAATCTTC 37712224 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 |||||| || || || ||||| Sbjct 37712225 ATCTATGACACCAGCTGCCACA 37712246 >seq3 Length=223996068 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 19114103 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19114044 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| ||||| |||||||| ||||||||||| Sbjct 19114043 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATT 19114009 >seq9 Length=94583238 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| | |||||||| ||||| || ||| Sbjct 74650070 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGCTTATACATTTTCCAAATGTCAGG 74650011 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| ||||||||||| || ||||||| Sbjct 74650010 GTACTGGATTGGGAAGATGACAAATC 74649985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694621336754240