Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq3 93.3 4e-14 seq23 82.4 8e-11 >seq9 Length=94583238 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 74660339 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 74660280 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 74660279 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 74660220 Query 23651 CCAC 23654 |||| Sbjct 74660219 CCAC 74660216 >seq3 Length=223996068 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 19112515 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 19112456 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 19112455 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 19112396 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 19112395 ACCACACGT 19112387 >seq23 Length=62282865 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 8390 CACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCT 8449 ||||||| ||| |||| | | |||||| || |||| |||||||||||| |||||||| Sbjct 15559956 CACTGCAGCCTAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCTGAGTAGCT 15559897 Query 8450 GGGATTACAGGCAAAAGCCACCA 8472 |||| |||||||| |||||||| Sbjct 15559896 GGGACTACAGGCACGAGCCACCA 15559874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521452369332400