Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 161 2e-34 seq17 154 4e-32 seq22 136 1e-26 seq14 136 1e-26 seq1 109 1e-18 >seq11 Length=62170480 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||||||||||| || || || || || |||||||| |||| Sbjct 32766395 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 32766339 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 32766338 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 32766281 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 32766280 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 32766221 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | ||||| ||| |||| || || || || ||||| || ||| Sbjct 32766220 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTT 32766178 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 32766156 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 32766099 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 32766098 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 32766039 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 32766038 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 32765979 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || ||||| || ||| Sbjct 32765978 TCCAGAAGGAGTCGACCCTGCACCTGGTT 32765950 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 32765928 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 32765871 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 32765870 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 32765811 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 32765810 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 32765751 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||||| || || ||||| || || Sbjct 32765750 TTCAGAAAGAGTCGACCCTGCACCTGGT 32765723 >seq17 Length=72251135 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| |||||||| |||||||| || ||| Sbjct 50453644 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGA--GCCCAGTG 50453701 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50453702 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50453761 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 50453762 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50453821 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 50453822 TCCAGAAAGAGTCCACTCTGCACCTGGT 50453849 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| |||||||| |||||||| || ||| Sbjct 50452305 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGA--GCCCAGTG 50452362 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || |||||||| ||||| || ||||||| Sbjct 50452363 ACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGC 50452422 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 50452423 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50452482 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 50452483 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 50452523 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 50452533 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 50452590 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50452591 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50452650 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 50452651 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50452710 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 50452711 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 50452751 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 50453872 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 50453929 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50453930 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50453989 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 50453990 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50454049 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 50454050 TCCAGAAAGAGTCCACTCTGCACCTGGT 50454077 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 50454100 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 50454157 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50454158 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50454217 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 50454218 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50454277 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 50454278 TCCAGAAGGAGTCCACTCTGCACCTGGT 50454305 Score = 143 bits (158), Expect = 6e-29 Identities = 158/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 50454328 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 50454385 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50454386 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50454445 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 50454446 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 50454505 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 50454506 TCCAGAAAGAGTCCACTCTGCA-CTTG 50454531 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| | ||||| || ||| || Sbjct 40432446 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCCTGAGGTCGAGCCCTCGGAT 40432505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||| || || || || ||| | |||| || |||||| | ||||| ||||||||| Sbjct 40432506 CCCACAGAAAATGTAAAGGTCAAGGTCCAGGGTAAGGAAGGAGTTCCTCCTGACCAGCAA 40432565 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| | ||||| | || || ||| | Sbjct 40432566 AGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTCTGTCTGACTACAACATT 40432625 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||| | |||||||| Sbjct 40432626 CAAAAGGAGTCCACTCTTCATCTTTTGTTGAGACT 40432660 Score = 100 bits (110), Expect = 7e-16 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 50452761 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 50452818 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 50452819 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 50452878 Query 178042 AACGACTTATCTT 178054 | | || ||||| Sbjct 50452879 AGAGGCTGATCTT 50452891 >seq22 Length=50780147 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| || ||| || Sbjct 41548285 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 41548344 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 41548345 ACAATTGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 41548404 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| | || || || || ||||||||| | ||| | | || || ||| | Sbjct 41548405 AGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 41548464 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 41548465 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 41548499 >seq14 Length=62568341 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| || ||| || Sbjct 36062974 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGAT 36062915 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 36062914 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 36062855 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| | || || || || ||||||||| | ||| | | || || ||| | Sbjct 36062854 AGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 36062795 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 36062794 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 36062760 >seq1 Length=275406953 Score = 109 bits (120), Expect = 1e-18 Identities = 159/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| | | |||||| Sbjct 67186967 CAGATTTTCGTGAAGACCCTGAC-GGGAAGACCATCACTCTTGAGGTCG-AGCCTCAGAT 67187024 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| |||||||||| ||||| |||| |||| Sbjct 67187025 ACAATAGAAAATGTAAAGGCCAAGATCCAG--ATAAGAAGGAATTCCTCCTGACCGGCAA 67187082 Query 178044 CGACT-TATCTTCGCCGGAAAACAGCTCGAAGATGGAA-GGACTCTTGCCGATTATAACG 178101 |||| ||||| || || || || || |||||||||| | ||| | | || || ||| Sbjct 67187083 AGACTGAATCTTTGCTGGCAAGCAACTGGAAGATGGAACGTACT-TGTCTGACTACAACA 67187141 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||||| || || || || ||||| || |||||||| Sbjct 67187142 TTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 67187178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203646898942404