Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq251 91.5 3e-13 seq103 91.5 3e-13 seq54 91.5 3e-13 seq196 89.7 1e-12 seq9 87.8 4e-12 seq36 86.0 1e-11 >seq251 Length=593008 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 456622 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 456563 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 456562 CCCCACGTTGGGC 456550 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 446450 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 446509 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 446510 CCCACGTTGGGC 446521 >seq103 Length=7275287 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 6223418 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6223477 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 6223478 CCCCACGTTGGGC 6223490 >seq54 Length=16385757 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1895275 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1895216 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1895215 CCCCACGTTGGGC 1895203 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1899089 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1899030 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1899029 CCCCACGCTGGGC 1899017 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1902514 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1902455 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1902454 CCCCACGCTGGGC 1902442 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1910614 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1910673 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1910674 CCCCACGTTGGGC 1910686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1927856 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1927915 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1927916 CCCACGTTGGGC 1927927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 1905808 CTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1905867 Query 165767 AGCCCCACGATGGGC 165781 ||||||| | |||| Sbjct 1905868 AGCCCCATGCCGGGC 1905882 >seq196 Length=1360987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1330048 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1330107 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1330108 CCCACGTTGGGC 1330119 >seq9 Length=38035322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 13369559 TGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 13369618 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 13369619 CCCCACGTTGGGC 13369631 >seq36 Length=24238919 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||| |||||| ||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 23462995 CGCCTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTT 23462936 Query 165765 CGAGCCCCACGATGGGC 165781 ||||||||||| ||||| Sbjct 23462935 CGAGCCCCACGTTGGGC 23462919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057141221879510