Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq31 473 9e-129 seq8 372 2e-98 seq3 325 3e-84 seq41 123 2e-23 seq75 87.8 1e-12 >seq31 Length=24795140 Score = 473 bits (524), Expect = 9e-129 Identities = 453/579 (78%), Gaps = 1/579 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||||||||||||||||||||||||||| || | |||| Sbjct 20769850 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTGATGCCTTTC 20769791 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || | || ||||||||||| ||| |||||| | |||||| |||||||| | | Sbjct 20769790 TCCTCCTGGATATCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTATATTTCTCCAAA 20769731 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| |||||| || ||||| | ||| ||||||| ||| Sbjct 20769730 TCAACTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATAAGCCTTGTCACAAGTAGT 20769671 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| |||| ||||| ||||| |||||||| ||||| | || ||| Sbjct 20769670 CTAAGATGGCCTGGCCTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTACCCAA 20769611 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| || |||| |||||||||||| || || |||||||||| |||||||| | | Sbjct 20769610 ACCATGTCCACCTTATGTGCTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGA 20769551 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTA-GTTCCTTGCTGAGAACAAC 4313 || ||||| | |||||||| || |||||| | |||| | |||| | |||||||| | Sbjct 20769550 CTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGGTTCTCTACTGAGAACTAT 20769491 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 |||||||||| | |||||||| | ||||||| ||||| |||||||| ||||| |||| Sbjct 20769490 ATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACC 20769431 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||||||||||||||| Sbjct 20769430 CATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGTGGTCATTCTTTGGAAATA 20769371 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 || || |||||| | || ||||| |||| || || | ||||| ||||||||||| Sbjct 20769370 CTTGAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTT 20769311 Query 4494 TTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | ||||| | || |||||||| | ||||||| Sbjct 20769310 CTGGGACACAGCGATGATACAGTTTAGCGGACGAACCAT 20769272 Score = 154 bits (170), Expect = 1e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26950 GAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATG 27009 |||||||||| || || || |||||||| |||||||| ||||||||||| ||| || | Sbjct 19305325 GAACAATGGGGGTGACACAGGTGCAGCCCACAGTCACCAGCATCTTCTCCAGCTGGAAGG 19305266 Query 27010 AATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | | || ||| | || | | | |||| || | ||||| || ||||| ||||| | Sbjct 19305265 AGTGGGGACAGTGCCGAGACTCCCTTCGCAGAACCAAGATCTCCTGCTGGATGGGGACGG 19305206 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 |||||||||||| |||||| ||||| |||| ||| ||||| || ||| | | ||||| | Sbjct 19305205 AGTTCATGTGGTGGTCTACCTTCCCTTCAGTATTGACACAGCCCCAGTGGAGGCACTTGG 19305146 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| |||||||| || ||||| || | || ||||| || Sbjct 19305145 CCTCCCAGATCACAGAAGGGTATCTCTCAGGGTCCTCATTCCG 19305103 >seq8 Length=41820603 Score = 372 bits (412), Expect = 2e-98 Identities = 429/572 (75%), Gaps = 8/572 (1%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| ||||||||||||||||||||| ||| | ||||| || || |||| Sbjct 31895411 ATTAATCATTCTTTGCATATACTTCAAATTTGTACTCAATGCCTTTCTTCTCCTGGACAT 31895352 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||| || ||| ||| || |||||| ||| |||| | |||||| ||||||| Sbjct 31895351 CAGAAAGAATACCTGGGTATACTGGGGGAAGTTTATATCTCTCCAAATCAAAGTCTGGAA 31895292 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||| |||||| |||||| || ||||| ||||| |||||||| ||| |||| | || || Sbjct 31895291 AAAGTATGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGGTGGCCTG 31895232 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | || | | ||| ||||| |||||||| ||||| | |||||| |||||||| |||| Sbjct 31895231 GTTTCTTCGTGGTTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTT 31895172 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA-AA 4266 ||||||||||||| | || ||| |||||| |||||||| | ||| || || | || Sbjct 31895171 TATTTGCTAATTCCAATTACTCAATAACTTTTAAGGCATCATCCAGACTTTTGGCAAGAA 31895112 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTC-TGCC 4325 ||||||||| || ||| | || || || || |||||||| | |||||||| | | Sbjct 31895111 AAATGAGCTTCTTGGGGAGGTTCTTTAAGGTCTCAACTGAGAACTAAATTAATTCTTTTC 31895052 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 ||||||||| | ||||||| ||||| |||||||| ||||| |||||||||||||||| Sbjct 31895051 CTTTAAAGGCTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACTAA 31894992 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT-GT----TTAAAA 4440 ||| || ||| | || || || | || |||||||||||||||| || || || Sbjct 31894991 ATTTTGCTTACGTTCTA-TGAGGAAGATGTGGTCATTCTTTGGAAATAGTGTACTTGAAT 31894933 Query 4441 TCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCT 4500 |||||| | || ||| | ||| | || | |||| ||||||||||| || | Sbjct 31894932 TCATTCCTGAGCGGGGGCTACAGCACGCCCCCGTTCTTGCAGATGCCCATGTTCTGGGAC 31894873 Query 4501 ACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || |||||||||||||| | ||||||| Sbjct 31894872 ACCGCGACAATGCAGTTTAGGGGAAGAACCAT 31894841 >seq3 Length=56672525 Score = 325 bits (360), Expect = 3e-84 Identities = 404/550 (73%), Gaps = 5/550 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||||| |||||| || | | ||| ||||||||||| ||| ||| |||||| Sbjct 23996027 AAAACACATTCACATTAATTGTTATCTTTATACACTTCAAATTTATACATAACACTTTTT 23995968 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||| ||| |||||| | |||||| ||||||| | | Sbjct 23995967 TCCTCCTGGACACCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTACATTTCTCCAAA 23995908 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| || ||||||||| |||| | |||||| || |||||||| || || ||| ||| Sbjct 23995907 TCAATTTATGGAAAAAATGTGTTGCTTTCAAATTCCTGCATGATTCTTGTTACAGCTAGT 23995848 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || ||| || ||| | |||||| ||| ||||| ||||||| ||||| | | |||| Sbjct 23995847 CTAGGATGGCCTGGCTTGTTCATAGTTTCCTTATAAGCAGAACTGCCTCCCACTGTCCAA 23995788 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||| ||| || || |||| |||||||| || | || ||||||| ||||||| | | Sbjct 23995787 ACCACGTCCAC-TTCTTTGTTAATTCTGATTGCTTAATACGTTTTAAGTCATCATCCAGA 23995729 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || |||| ||||||||||| |||| | | ||||| ||||| | || ||||| | Sbjct 23995728 CTTTTGGCTAGAAAATGAGCTCCTTGTGAAGGTTCCTTGAGTTCTCTACTTAGAACTGGA 23995669 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| | | |||||| |||| |||| || ||||| ||||| Sbjct 23995668 TTAATTCTGTCCTTTAAAGGTCAGCTCTTCTAGGGAAGAGAGAGTCATGTCTTCCTACCC 23995609 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| |||||||||||| | | | | || || || ||| |||| |||||| Sbjct 23995608 ATAATCACAAAATTCTGTTTACC---TTCTGCTGAGGTTGTGGTCCTTCTCCGGAAATTC 23995552 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 ||||| |||||| | | | ||||| || | ||| | | ||||| ||||||| || Sbjct 23995551 TTAAATTCATTCCTGA-ACGGGGCCAGGGTAGGTTTCTGTTCTTGCCGTTGCCCATCTTC 23995493 Query 4495 TGAGCTACAG 4504 || | |||| Sbjct 23995492 TGGGACACAG 23995483 >seq41 Length=21659380 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| ||||||| |||||||||||| Sbjct 9953352 TTATAAACAGAACTGCCTCCCACTACCCAAACCATGTCCACTTTATGTGCTAATTCTGGT 9953293 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 9953292 TGCTCAGTAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 9953233 Query 4285 AGCTCC 4290 | ||| Sbjct 9953232 GGTTCC 9953227 Score = 118 bits (130), Expect = 8e-22 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 9946557 CTTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGG 9946498 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| |||||| ||||||||||||| ||||||||||| Sbjct 9946497 AATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTT 9946453 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 9963209 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTAATGCTTTTC 9963150 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || | || ||||||||||| ||| ||| Sbjct 9963149 TCCTCCTGGATATCAGAAAGAACACCTGGGTAT 9963117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 9956842 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAACTCCTGCAT 9956783 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||||| |||||||| ||| ||| | || ||| |||| ||||| || Sbjct 9956782 AATCCTTGTCACAAATAGTCTAACGTGGCCTGGCCTGTTCATGGCTTCCTT 9956732 >seq75 Length=11179515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 1477953 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 1477894 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || || ||||| |||||||| | Sbjct 1477893 CTTCTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGA 1477834 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | ||| || || || || |||||||| Sbjct 1477833 TTTTCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 1477791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361029402713627