Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1174 268 1e-66 seq46 206 3e-48 seq11 145 9e-30 seq9 122 1e-22 >seq1174 Length=3694 Score = 268 bits (296), Expect = 1e-66 Identities = 266/343 (78%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 1783 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 1724 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 1723 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGA 1664 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 1663 CACACTGGAGACCAGGTGATGAACTTCGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1604 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| |||| || |||||||||||||| || || ||| || || || ||| Sbjct 1603 GGGGCAGGCAGAGCCTGGCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCATTTACC 1544 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1543 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTA 1484 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG-GTGA 83398 |||||| || |||||| | || | ||||| ||||| |||| Sbjct 1483 AGGGAATTCAGGATCTCTTCGTTTTTAGCGTTCTCCTGCGTGA 1441 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || ||||| ||||| ||||| | || |||| Sbjct 1214 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 1155 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 1154 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1095 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | | || | ||||| || || || |||| Sbjct 1094 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCATGGGCTCCCCGCCGG 1035 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||||||||| ||||||| ||||| || Sbjct 1034 CCAACGGGCGTGCAGAGAAGGAATACACGGA 1004 >seq46 Length=19876874 Score = 206 bits (228), Expect = 3e-48 Identities = 330/467 (71%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| || | | ||| | ||| | ||||| ||||||| Sbjct 1693198 AGCAGGGCTTCGATGTCAGGCTTCATGTGGATGGTTAGAAAGCAGCAGCTGTCCCTGCGC 1693139 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| || || | || |||| ||||||||||| |||||||| |||||| || || Sbjct 1693138 ATAGGCACACCATCTGGGCCTACCAGGAACTTCTCGAGGTTCCAGGTGACGTCGGTG-GG 1693080 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||| | || | || | |||||| ||| Sbjct 1693079 CACACTGGAGACCAGGTGATGAACTTGGGGTGGGTCGTGCACGCAGTGGCGTCGTCACTA 1693020 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| |||| || ||||||||||||| || || ||| || | ||| || Sbjct 1693019 GGGGCAGGCAGAGCCTACCGCAGGAAGGCGAAGAAGGGGTGCGCCTGCGCGCTGTTCCCC 1692960 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTT---CCCA---GGACGGACG 83350 | ||||||||| ||| | ||||| |||||||| | | | ||| | ||| | Sbjct 1692959 TGGCACTTCTC----AGCGTGAAGTTGGGCTCGAACCAGCTACGGCCACTGAGTGGGAAG 1692904 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTA 83410 | | |||||||| |||||| ||| ||| || ||||| || ||| ||| || Sbjct 1692903 TAC-TCAGGGAATTTCGGATCTCTTTGCTCTTGGCATTCTCCTGATGCACGATCTGCTTG 1692845 Query 83411 CACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || | ||| | ||||| | ||| || | || || ||| || || |||||||||||||| Sbjct 1692844 CAAGAGAAGCGGAGCACCA-CAGGCCTGGGGC-CCGAGGTGCGGCGGCAGCTCGTTCATC 1692787 Query 83471 TGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517 || | ||| || | ||| || | |||||||| |||| |||||||| Sbjct 1692786 TGGGCGTAGTCTCTGACGGTTGTGCCTCAGAGCAACGCCACGTTCTC 1692740 >seq11 Length=36659245 Score = 145 bits (160), Expect = 9e-30 Identities = 258/368 (70%), Gaps = 14/368 (4%) Strand=Plus/Minus Query 83142 AGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCT 83201 |||||||||| |||||||||| || || || | ||||||||| |||||| |||| || Sbjct 27703397 AGAACTTCTCCAAGTTCCAGGTGACATCATTACATCACACTGGAAACCAGGTGATGAACT 27703338 Query 83202 GGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 |||| | ||| |||| ||| ||| | | || || ||||| || |||||| ||||| Sbjct 27703337 TGGGGCTGGTCATGAGCAGTGG-CAT--CATTACTGGGGGCCGGAAGAGCCTCTTGTAGG 27703281 Query 83261 AAGGCGAAGAGCGGATGTGCCCTTG--CACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 ||| |||||| || ||||||||| |||| | ||||||||||||| | ||||| | Sbjct 27703280 AAGTTGAAGAGGGG--GTGCCCTTGTGCACCACTCTCCTCGCACTTCTCAGAAAGCATGA 27703223 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | || |||||||| | |||| ||| | || | ||| | |||| || |||||| | | Sbjct 27703222 ATTTGGGCTCGAACCTGTTCTGAGGTCTGAGGAACTTGAAGGAATTCAGGATCTCTTCCT 27703163 Query 83379 TCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCC 83438 || ||| ||||||| || | | || | || || ||||| | || ||||| |||| Sbjct 27703162 TCCTGGC-ATTTCCTGATGCCAGCACCGCTTGCATGGGAAGCAAATATTGACCAGGCCCC 27703104 Query 83439 GAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTC 83498 || ||| | ||||| | | || |||| | || ||| ||| || |||||| Sbjct 27703103 TGGC----AGG-GGTGCTGCTGATGCTTGTTCTGGGCATAGTCCTGGATAGTTGTACCTC 27703049 Query 83499 AGAGGGAC 83506 ||| ||| Sbjct 27703048 GGAGCGAC 27703041 >seq9 Length=38035322 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 30369821 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 30369763 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 30369762 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 30369703 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 30369702 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGTCGCGCATCAAGCTCATCCGCCACTAC 30369644 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 30369643 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 30369585 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 30369584 CAAGCTGGACGAGCGCTGCCGGCGCCG 30369558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608413433045080