Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq62 116 3e-21 seq51 104 2e-17 seq20960 100 2e-16 seq2089 86.0 5e-12 seq109 86.0 5e-12 >seq62 Length=14533578 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| |||||| Sbjct 3816109 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCC 3816050 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| ||||| || || ||| Sbjct 3816049 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGG 3815990 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| || ||| ||||| | ||| | || ||| Sbjct 3815989 ATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 3815930 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 3815929 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3815901 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 3816337 ACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3816278 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| ||||| || || ||| Sbjct 3816277 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGG 3816218 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 3816217 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 3816158 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 3816157 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| |||||| Sbjct 3815881 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCC 3815822 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || || Sbjct 3815821 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGG 3815762 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 3815761 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 3815702 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 3815701 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3815673 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 3815653 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3815594 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||||||||| || Sbjct 3815593 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGG 3815534 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 3815533 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 3815474 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 3815473 CCGGTCAGGGTCTTCACGAAGATTTGCAT 3815445 >seq51 Length=18513618 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 16774077 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16774136 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 16774137 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774196 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16774197 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774256 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 16774257 CCCGTCAGGGTCTTCACGAAGATCTGCATG 16774286 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 16774305 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCC 16774364 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 16774365 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774424 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16774425 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774484 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 16774485 CCCGTCAGGGTCTTCACGAAGATCTGCATG 16774514 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 16774533 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16774592 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 16774593 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774652 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16774653 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774712 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 16774713 CCCGTCAGGGTCTTCACGAAGATCTGCATG 16774742 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 16774761 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCC 16774820 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 16774821 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774880 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16774881 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774940 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 16774941 CCCGTCAGGGTCTTCACGAAGATCTGCATG 16774970 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 16773849 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16773908 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 16773909 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16773968 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 16773969 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774028 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || |||| || || || || ||||||||| || Sbjct 16774029 CCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 16774061 >seq20960 Length=292 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||||| || |||||||| || || |||||| ||| || Sbjct 124 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 183 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| || |||| | | |||||| || ||||| ||||| |||||||| Sbjct 184 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 243 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 || ||| ||| || | |||| |||||| || ||||||||| Sbjct 244 GATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTC 288 >seq2089 Length=2406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||| | | || || ||||| || | ||||| | | |||||| |||||| Sbjct 1087 CACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTC 1028 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| | || || ||||||||||||||| Sbjct 1027 CAGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTG 968 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 | ||| ||| || | || |||||| | || |||| || ||| | ||||| Sbjct 967 GACTTTGGTTTTGACATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTTT 908 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||| || ||||| |||||||| Sbjct 907 ACCCATCAGAGGCTTCACAAAGATCTGCAT 878 >seq109 Length=6837600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||| | | || || ||||| || | ||||| | | |||||| |||||| Sbjct 133662 CACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTC 133603 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| | || || ||||||||||||||| Sbjct 133602 CAGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTG 133543 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 | ||| ||| || | || |||||| | || |||| || ||| | ||||| Sbjct 133542 GACTTTGGTTTTGACATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTTT 133483 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||| || ||||| |||||||| Sbjct 133482 ACCCATCAGAGGCTTCACAAAGATCTGCAT 133453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433564041284884