Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq8 1636 0.0 seq2 560 7e-155 seq43 192 4e-44 >seq8 Length=41820603 Score = 1636 bits (1814), Expect = 0.0 Identities = 1352/1651 (82%), Gaps = 42/1651 (3%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || ||||| || ||| ||||||| |||||||||| ||| || ||| ||| ||||||| Sbjct 17813312 TCGTAGGCCGGTCTTTACTGAGGTTATTTGTCTAGTAAAGGAATGTATTTTTGCCATCAC 17813253 Query 107200 TCTGGAGTTGAACTT--GATGTTCT--------------GGATTAGTTTGTAATTAAAGG 107243 | |||||||| |||| ||||||| || ||||| ||||||| |||| Sbjct 17813252 TTTGGAGTTGCACTTTTGATGTTCCTGTGAATACATGCAGGGTTAGTGTGTAATTGAAGG 17813193 Query 107244 CATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCT---TGCCTGTGCCCAAACTCTCCTG 107300 ||||||||||||||||||||| | |||||| ||| | | |||||||||||||| ||| Sbjct 17813192 CATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCTGTCCTTGTGCCCAAACTCTACTG 17813133 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 | || ||| || ||| |||| | |||||||||||| | || | | | | | ||| Sbjct 17813132 GTTTCTCATTCCGTGAGGATGATTTGGTGGAAGAAGATACAATGGCAGCAGCGTTACCTG 17813073 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 |||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || Sbjct 17813072 TGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGGCTTTGTCTCAGATTG 17813013 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 |||||||| | |||||| |||||||| ||||||| || || ||||| ||||||||| Sbjct 17813012 AAATGTGACTTTGATTCCCTGGATCTGAAGTCCAGAGATTTTCAGAGCTGGCACTGTAGA 17812953 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| |||||||| |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 17812952 GACATCTTGTACAAGTCCCTGAAACTGCCAGCAAAGAGATCCATCAGCTGTTCTCGGATC 17812893 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | |||||||||| | |||||| | |||| | || ||||| ||||| | ||||| Sbjct 17812892 ATCCAAGGGGACCAGCAGGCAGTGATTGAGGCTGTGCTGGACAATCTGGAGATCAAGAAC 17812833 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| |||| | ||| | ||||| ||||| |||||||||||||||| ||| Sbjct 17812832 AAGCGGAAGCCTTTCACAGACACTGACTACCTTAACATGACCAGAGACTGTGAGCACTTT 17812773 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 ||||| ||||||||||||||| |||||| ||||| |||||||| |||||||||| ||| Sbjct 17812772 AAGGCTGAAAGGAAGTTCATACGGTTCCCTCTGAGCCAAGAAGAGTTAGACTTCCCTATT 17812713 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||||||||||||||| || |||||||||||| | |||| ||||| ||| Sbjct 17812712 GCCTACTCAATGGTGGTCCATGAGAAAATAGAAAACTTTGAAAGATTGCTCCGAGCTGTG 17812653 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 ||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| Sbjct 17812652 TATGCCCCTCAGAACATATACTGCATCCACGTGGATGAGAAATCCCCAGAAACTTTCAAA 17812593 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 17812592 GAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGTTGGTT 17812533 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 17812532 CGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTG 17812473 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 17812472 CTCCAGAGCCCAGTGCCATGGAAATACTTACTAAATACATGTGGGACAGACTTTCCTATA 17812413 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 17812412 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAG 17812353 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || || ||||| |||||| |||||| | |||||||||||| | ||||||| | |||| Sbjct 17812352 TCAGAAATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCACTATGAGACAAAAGAC 17812293 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| |||| |||| |||||||||||| |||||||||||||| |||| ||||||||| Sbjct 17812292 ACATTGTATGTAACCAACAAGATGAAGGATCCTCCCCCTGATAACATACCTATGTTCACA 17812233 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| |||| || || |||| |||||||| |||||||||||| ||||| || Sbjct 17812232 GGGAATGCCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAG 17812173 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||| | |||| |||||||||| |||||||||||||||||||| || || || |||||| Sbjct 17812172 TCCCGACAACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAGCATCTATGGGCC 17812113 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| || ||||||||||||||| |||| |||| |||||| |||| || Sbjct 17812112 ACGCTTCAGCGTGCACCATGGATGCCTGGCTCTATTCCCTACCACTCCAAGTTTCACGTC 17812053 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 ||||| ||| | ||||| |||||||| |||||||||||| ||| |||||| | |||| Sbjct 17812052 TCAGATATGGCAGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGT 17811993 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||||| ||||||||||| |||||||||||||| | | || | ||||| ||||| ||| Sbjct 17811992 ATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATTTATGGG 17811933 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | || |||||| | |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 17811932 ACTGGAGACCTGCATTGGATTCTTCAAAACCATCACCTCTTGGCCAACAAGTTTGACCCA 17811873 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||||||||| || || || ||||| |||||||||||| |||||||||||||||||||| Sbjct 17811872 AAGGTGGATGACAATGTTCTTCAGTGTTTAGAAGAGTACTTACGTCATAAGGCCATCTAT 17811813 Query 108621 GGGACTGAACTTTGA-------------------GCTGCACTGTGGGCCAGGGAC-TGTG 108660 ||||||||||| ||| ||| | ||| ||| || | || |||| Sbjct 17811812 GGGACTGAACTCTGACATAAACTATAAGAGGATTGCTAC-CTGAGGGGCAAGAACATGTG 17811754 Query 108661 CCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 |||| | | | | |||| || ||||||||||| ||| |||||| || |||| Sbjct 17811753 GATACATACTCCAGATGGGCTGGGACAATGTGGGGTGGGAGACCAGGGCTCTGCAATCTG 17811694 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 |||||||||| | || || |||||||| || Sbjct 17811693 TGGCATCCCCAA--GTTAGGGGGCTGCTATG 17811665 >seq2 Length=60041133 Score = 560 bits (620), Expect = 7e-155 Identities = 454/549 (83%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 108088 TACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT 108147 ||||| | |||| |||||| | |||||||||||| | || ||| | ||||||| | | Sbjct 17242910 TACCTACCGAGTACAAAAAGACTCGCTGGAAATATCACT--GAGACAAAAGACACATTCT 17242967 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 || |||| |||||||||||| |||||||||||||| || | || ||||||||||||| Sbjct 17242968 ACGTAACCAACAAGATGAAGGATCCTCCCCCTGATAACATATCTATATTCACAGGGAATG 17243027 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 ||||| |||| || || |||| |||||||| |||||||||||| ||||| || ||| | Sbjct 17243028 CCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAGTCCTGAC 17243087 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 |||| |||||||||| |||||||||||||||||||| || | || |||||||| |||| Sbjct 17243088 AACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAGCGTCTATGGGCCACGCTTC 17243147 Query 108328 AGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||||||| || ||||||||||||| | |||| |||| |||||| |||| ||||||| | Sbjct 17243148 AGCGTGCACCATGGATGCCTGGCTGTATTCCCTACCACTCCAAGTTTCACGTCTCAGATA 17243207 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 || | ||||| |||||||| |||||||||||| ||| |||||| | | || ||||||| Sbjct 17243208 TGGCAGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATTAGTATGGGGG 17243267 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | ||||||||||| |||||||||||||| | | || | ||||| ||||||||| | || | Sbjct 17243268 CACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATTTACGGGACTGGAG 17243327 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGG 108567 ||||| | |||||||| || ||||||||||||||||| |||||||||||||| | ||||| Sbjct 17243328 ACCTGCATTGGATTCTTCAAAACCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGG 17243387 Query 108568 ATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTG 108627 |||| || | || ||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 17243388 ATGACAATGCTCTTCAGTGTTTAGAAGAGTACTTACGTCATAAGGCCATCTATGGGACTG 17243447 Query 108628 AACTTTGAG 108636 |||| |||| Sbjct 17243448 AACTCTGAG 17243456 >seq43 Length=20825300 Score = 192 bits (212), Expect = 4e-44 Identities = 587/894 (66%), Gaps = 39/894 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || |||||||| || || || ||||| ||| | || Sbjct 3634809 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCCATTGCATATTCTATAGTGGTTCATCACAAA 3634750 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 3634749 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATCTCTACTGCATT 3634690 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | ||||| | || ||| |||||| Sbjct 3634689 CACGTGGACAGAAAATCAGAGGATTCCTTTTTGGCCGCGGTGATGGGCATCGCCTCCTGC 3634630 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 3634629 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAACGTGGTGTATGCCTCTTGGAGTCGG 3634570 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| ||||| | || || | ||||| |||| || Sbjct 3634569 GTTCAGGCCGACCTCAACTGCATGCAAGACCTCTACCGGA--TGAGTGCAGACTGGAGGT 3634512 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || ||||| || || ||||| ||||| |||| | Sbjct 3634511 ACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCTGGAGATTGTCCGGA 3634452 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 ||||| ||| | |||| | ||||| | ||||| ||| | || || | || Sbjct 3634451 AGCTCAAATCGTTAATGGGTGAAAACAGCCTAGAGTCCGAGAGAATGCCATCCAA---CA 3634395 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AGGTGACAGACACACTGTACCCT-ACCAGCAA 108160 ||||| | | |||||| | | || || || | | | | || |||| || Sbjct 3634394 AAAAAGAAAGGTGGAAAAAGCATTACACAGTTGTTA-----ATGGAAAGCTGACCAACAC 3634340 Query 108161 GATGAAGGAC---------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 | || |||| ||||| | ||| | ||| ||||| | || | |||||| Sbjct 3634339 GGGGACGGACAAAATGCACCCTCCTCTTGAAACG---CCCTTGTTCTCGGGCAGTGCCTA 3634283 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGAC 108270 ||||||| | | | | ||| | |||| |||| || || |||| ||| Sbjct 3634282 CTTTGTGGTCAGTAGGAAGTATGTGCGCTATGTGCTAGAGAATGAAAAGATCCAGAAGTT 3634223 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | | || |||| |||||||||||| || || || || | ||||||||||| | ||| Sbjct 3634222 TA-TGGAGTGGGCCAAAGACACCTACAGTCCAGATGAGTATCTCTGGGCCACTATCCAGA 3634164 Query 108331 GTGCTCCGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGAC 108386 | | ||| | | | || ||||| ||| |||| |||| |||||| |||| || ||| Sbjct 3634163 G-GATCCCCGAAGTCCCAGGCTCACTGTCCCTAAGCCAG---AAGTATGACATGTCTGAC 3634108 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGG 108446 ||| || ||||| ||| ||||||||||||||||| || || |||||| || |||| Sbjct 3634107 ATGCACGCGATCGCGAGGTTCGTCAAGTGGCAGTACTTTGAAGGTGATGTCTCCAAGGGG 3634048 Query 108447 GCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGG 108506 || || || | |||||| || |||| | | | | || | | ||| || || Sbjct 3634047 GCCCCCTACCCGCCCTGCAGCGGGGTCCACGTGCGTTCTGTGTGTGTCTTCGGAGCAGGT 3633988 Query 108507 GACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 ||| || ||||||| || | || || ||| | || || |||||||||||| || Sbjct 3633987 GACTTGAACTGGATGCTACGAAAGCACCACTTGTTTGCCAACAAGTTTGACACG 3633934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348054973513698