Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 seq18 125 9e-24 seq28 98.7 1e-15 seq53 91.5 2e-13 >seq1 Length=84051066 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || | Sbjct 77630839 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 77630898 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || ||||| || || ||||||||||||||||| ||||||||||||| Sbjct 77630899 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 77630958 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 77630959 CCACAACCCGCTCTCC 77630974 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 77632831 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 77632890 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 77632891 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 77632936 >seq18 Length=30197870 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1310552 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1310611 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1310612 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1310671 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 1310672 CTGTTTCTTATACCATA 1310688 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 1316578 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1316637 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | ||| ||||| || ||||| || || ||||| |||| Sbjct 1316638 AATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTGGGCTTCTGGACTCTCAAAAGGAT 1316697 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 1316698 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 1316757 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 1316758 GTTTATTTGA 1316767 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || ||||| | | Sbjct 1321426 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1321485 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1321486 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1321545 Query 63383 CGGTTCCA 63390 || |||| Sbjct 1321546 AGGCTCCA 1321553 >seq28 Length=26214627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||| ||||||||||| ||| || | ||||| || || |||||||||| || ||| Sbjct 10236610 GTTTCTTTCTATGATATATATATTATTCTGCAAGCATTTATACTGACTACTGCCGTATTT 10236551 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 |||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| Sbjct 10236550 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTG 10236499 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||| ||||||||||| ||| || | ||||| || || |||||||||| || ||| Sbjct 10248765 GTTTCTTTCTATGATATATATATTATTCTGCAAGCATTTATACTGACTACTGCCGTATTT 10248706 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 |||| | ||||| ||| |||||||||||| |||||||||||||| ||| ||| Sbjct 10248705 CTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTG 10248654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| |||||| Sbjct 10261153 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGTGCAC 10261094 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 10261093 ATTCGAATGG 10261084 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 188244 TTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACAGCT 188302 |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| || Sbjct 10257880 TTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACATCT 10257821 Query 188303 GCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349 | | |||||||||||||| | || ||||||||| |||| | ||| Sbjct 10257820 TCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACATGAGAG 10257774 >seq53 Length=17124947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 11531824 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 11531765 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 11531764 TACTGGATTGGAAAGATGACAAATC 11531740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629420995984560