Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq28 187 3e-42 seq1 132 6e-26 seq18 131 2e-25 seq53 91.5 2e-13 >seq28 Length=26214627 Score = 187 bits (206), Expect = 3e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| ||| |||||||||| ||||||| Sbjct 10230301 TTTTTATTAACTGCTTCCAAAAACCGCAACAGATGCAGGAATAGATTGATGACATCCAAG 10230360 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 10230361 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 10230420 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | ||||| || ||||| |||| Sbjct 10230421 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCACAGCAGCCAAGACCAACTCC 10230480 Query 9411 ACTGTTTC 9418 |||||||| Sbjct 10230481 ACTGTTTC 10230488 Score = 187 bits (206), Expect = 3e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| ||| |||||||||| ||||||| Sbjct 10242535 TTTTTATTAACTGCTTCCAAAAACCGCAACAGATGCAGGAATAGATTGATGACATCCAAG 10242594 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 10242595 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 10242654 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | ||||| || ||||| |||| Sbjct 10242655 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCACAGCAGCCAAGACCAACTCC 10242714 Query 9411 ACTGTTTC 9418 |||||||| Sbjct 10242715 ACTGTTTC 10242722 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||| |||||| ||| |||||||||||||| |||||||||||||||||||||| | ||||| Sbjct 10236492 CCTCCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 10236551 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| || | || | ||||||||||| ||| Sbjct 10236552 AATACGGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATATATCATAGAAAGAAAC 10236610 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||| |||||| ||| |||||||||||||| |||||||||||||||||||||| | ||||| Sbjct 10248647 CCTCCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAGA 10248706 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| || | || | ||||||||||| ||| Sbjct 10248707 AATACGGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATATATCATAGAAAGAAAC 10248765 Score = 105 bits (116), Expect = 9e-18 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 10261084 CCATTCGAATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 10261143 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGG 9945 | |||||||| | ||| | || |||| | ||||||| ||| Sbjct 10261144 TCGAGGAGCAGGGGTACCGGGGGTCGGGGTCGGCCATGTCGG 10261185 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797 ||| | |||| || | |||| || | |||||||||||||| | | || ||| | || Sbjct 10257774 CTCTCATGTACAAATGTCCGTATAGACTCAAAGTATAAAAAAAAAGAAGATGTCACTGTA 10257833 Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAA 9844 ||||| |||| ||| ||| ||||||| | |||||||||||||||||| Sbjct 10257834 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAA 10257880 >seq1 Length=84051066 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 77630839 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 77630898 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| ||||||| Sbjct 77630899 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 77630958 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 77630959 CCACAACCCGCTCTCC 77630974 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 77632831 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 77632890 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 77632891 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 77632936 >seq18 Length=30197870 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1310552 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1310611 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1310612 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1310671 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 1310672 CTGTTTCTTATACCATA 1310688 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||||||| | Sbjct 1321426 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1321485 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1321486 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1321545 Query 66176 CGGTTCCA 66183 || |||| Sbjct 1321546 AGGCTCCA 1321553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 1334198 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCAGGA 1334257 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1334258 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1334317 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 1334318 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 1334363 >seq53 Length=17124947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 11531824 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 11531765 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || |||||||| || ||||||| Sbjct 11531764 TACTGGATTGGAAAGATGACAAATC 11531740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657758340360680