Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq75 138 1e-27 seq31 100 2e-16 seq150 87.8 2e-12 >seq75 Length=11179515 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 1480921 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 1480862 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||| |||||||||||| || || Sbjct 1480861 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCA 1480802 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | | || || ||||| || |||||| Sbjct 1480801 CCACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATC 1480758 >seq31 Length=24795140 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA- 3021 || || ||||| || || || | || ||||| || | ||| || || ||||| | | Sbjct 20769568 TTTAAGGCATCATCCAGACTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGG 20769509 Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 |||||| || | || ||||||||||||| | | ||| | ||||| | || || || Sbjct 20769508 TTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGA 20769449 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 |||||||| | | |||||||| |||| ||||| || |||| | || |||| || | Sbjct 20769448 GAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGT 20769389 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | | ||| || || || |||||| |||| Sbjct 20769388 GGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGCGGCGGCCAGGGCA 20769339 >seq150 Length=2801850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 |||| | | | | |||||| | | |||||| ||||| || || | |||||||| Sbjct 64916 CCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTAACTCCCTTGGAAGACAGTTCCC 64857 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | || ||||| ||| |||||||||||||||||||||||| || ||| || | || | Sbjct 64856 AAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGAATA 64797 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516 | |||||| || | ||||||||| || |||| Sbjct 64796 CAGGTTTGGTTGTCAGCAGAGGAAATTCATCCC 64764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| || || | ||||| | || ||||||| ||| ||| Sbjct 65317 GTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGCTTCAGGCCTGTGGTGTG 65258 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||| || || || ||||| |||||||||| || | || || | |||||||| Sbjct 65257 TACCATCCTGTAGGTGAGCAGGGCATAGCTGGCGACATTGGAGGGCACAACCAGGCCCAT 65198 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || ||| |||| | ||||||||||||||| || ||| ||| ||||| || Sbjct 65197 GTCTCCTGAGCTCCGGTATAACTGGCAGGACAGCTCACCATTTTCCAGGTAGAACTGGCA 65138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427513358502960