Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_003524.1 Length=33507 Score E Sequences producing significant alignments: (Bits) Value seq449 214 4e-51 >seq449 Length=32345 Score = 214 bits (236), Expect = 4e-51 Identities = 329/459 (72%), Gaps = 28/459 (6%) Strand=Plus/Plus Query 28237 TAGAAAAGTTAGAGGAGATTTAGAGAATGAATAAAGTGGTTTTAATAGGTAGGTTAACAA 28296 || ||||| ||||| | |||| ||||||||||| | |||||||| || ||||||| Sbjct 4973 TAAAAAAGAAAGAGGTAAATTAGTTTATGAATAAAGTAATATTAATAGGAAGATTAACAA 5032 Query 28297 AGGATCCAGAATTAAGATTTACAGCTACTAAG-GGAACAGCAGTTGCAAGATTTACTTTA 28355 |||||||||| ||||||||| ||| | ||| || | ||||||| ||||||||| | Sbjct 5033 AGGATCCAGATTTAAGATTTGGAGC-AGGAAGTGGGAATGCAGTTGTAAGATTTACAGTT 5091 Query 28356 GCTGTAAATAGGAAATATAAAGGTGAAAATGGTGAGTATGAAGCTGACTTTATACAATGT 28415 || || | ||| | || |||||| | |||||||||| |||||| | ||| Sbjct 5092 GCAGTTACTAG-----AGCAA--TGAAAAAAG-----ATGAAGCTGATTTTATAAATTGT 5139 Query 28416 ATTGCATATGGGAAACCAGGAGAAATAATAGCACAATATATGACTAAAGGGAGACAGTTA 28475 || |||| |||||| ||||||| ||| ||||||||| | |||||||| | || || Sbjct 5140 ATAGCATTTGGGAAGATGGGAGAAACAATTGCACAATATTTTACTAAAGGTAAGCAAATA 5199 Query 28476 GCCATTGTAGGAAACATAAGAACTGGAAGCTATGAAGATAAAGAAGGAACTAAAAGATAT 28535 || ||| ||||| || ||||| || ||||| || | ||| || || |||||||||||| Sbjct 5200 GCTATTAGTGGAAATATTAGAACAGGCAGCTACGATGCTAAGGATGGTACTAAAAGATAT 5259 Query 28536 ACAACAGGAGTAGTTGTAGAAGGGTTTGATTTTATTGATTATGCAA--AAAGAGAAAATG 28593 ||||||| ||||| || ||| ||||| ||||| || ||| || ||||| || | Sbjct 5260 ACAACAGATGTAGTAGTTGAAACATTTGAATTTATCAATAATGGAAAGAAAGATGAAGTA 5319 Query 28594 ACT-TTGGA--GGAGCTT--TTAGTACACCAGACAATTCATTTAACAATGATGATATGGT 28648 | | |||| ||| | || | | || |||| | || |||| |||||| | Sbjct 5320 AATAATGGAATGGAAAATAGTTTTGATAATAG-CAAT--AGTT----ATGAAGATATGAT 5372 Query 28649 ACCAATAGATGATGGAGATGTACCATTTTAAAAATAACT 28687 || || |||||||||||| |||| |||||| |||||| Sbjct 5373 GCCTATGGATGATGGAGATATACCGTTTTAATGATAACT 5411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107036729423106