Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq18 122 1e-22 seq53 93.3 6e-14 >seq1 Length=84051066 Score = 147 bits (162), Expect = 3e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 77630839 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 77630898 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||||| Sbjct 77630899 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 77630958 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| | |||||| Sbjct 77630959 CCACAACCCGCTCTCC 77630974 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 77632831 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 77632890 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 77632891 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 77632936 >seq18 Length=30197870 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1310552 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 1310611 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 1310612 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1310671 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 1310672 CTGTTTCTTATACCATA 1310688 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || ||||||| | || Sbjct 1321430 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1321489 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 1321490 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1321549 Query 80059 TCCA 80062 |||| Sbjct 1321550 TCCA 1321553 >seq53 Length=17124947 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 11531825 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 11531766 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 11531765 GTACTGGATTGGAAAGATGACAAATC 11531740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717816497158280