Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq91 86.0 5e-12 >seq91 Length=9305606 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||| ||||| |||| | ||| | ||| ||||||||| | ||||| || ||| Sbjct 3697939 CCACCACAAAGTCTCAACA--AGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGAC 3697994 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||| ||| ||||| ||||| ||||| | ||| ||||| | || Sbjct 3697995 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATCAGGAGGA 3698054 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||| || || | ||| |||| | || | | ||| || | ||||| Sbjct 3698055 ATTTCTTCCTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACC 3698114 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | | || ||||| || || |||||||||||| |||||| || Sbjct 3698115 TCAACACTGAGGGTCTTTCCTGTAAGGGTTTTCACAAAATGTTGCATCTT 3698164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381135450625866