Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 >seq5 Length=45903626 Score = 113 bits (124), Expect = 4e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||| | || ||||| ||||| ||||| Sbjct 36359341 GGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGATGCCCCAGGCT 36359400 Query 127231 GAAAATCACGGACCC-GACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGAC 127289 || || | |||||| ||||| ||| | ||||| || |||||||| |||||||||||||| Sbjct 36359401 GAGAACGA-GGACCCAGACATCAAACAGCACGTGAACTCCCTGGGAGAAAAGCTGAAGAC 36359459 Query 127290 ATTGAGACTTCGACTGCGTCGCTG 127313 | | || ||||||| ||||| Sbjct 36359460 CCTCCGGCTGAGACTGCGGCGCTG 36359483 Score = 113 bits (124), Expect = 4e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||| | || ||||| ||||| ||||| Sbjct 36360300 GGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGATGCCCCAGGCT 36360359 Query 127231 GAAAATCACGGACCC-GACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGAC 127289 || || | |||||| ||||| ||| | ||||| || |||||||| |||||||||||||| Sbjct 36360360 GAGAACGA-GGACCCAGACATCAAACAGCACGTGAACTCCCTGGGAGAAAAGCTGAAGAC 36360418 Query 127290 ATTGAGACTTCGACTGCGTCGCTG 127313 | | || ||||||| ||||| Sbjct 36360419 CCTCCGGCTGAGACTGCGGCGCTG 36360442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429790359634424