Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq5 129 6e-25 >seq5 Length=45903626 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || || |||| || ||||||||||||||| ||||||| || | Sbjct 36360289 AGGGTTACCTGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 36360348 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || ||||||| || |||| ||||||||||||| ||||| || | Sbjct 36360349 TGCCCCAGGCTGAGAACGAGGACCCAGACATCAAACAGCACGTGAACTCCCTGGGAGAAA 36360408 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| |||| Sbjct 36360409 AGCTGAAGACCCTCCGGCT 36360427 Score = 125 bits (138), Expect = 8e-24 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||| ||| || || || |||| || ||||||||||||||| ||||||| || | Sbjct 36359330 AGGGTTACCCGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 36359389 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || ||||||| || |||| ||||||||||||| ||||| || | Sbjct 36359390 TGCCCCAGGCTGAGAACGAGGACCCAGACATCAAACAGCACGTGAACTCCCTGGGAGAAA 36359449 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| |||| Sbjct 36359450 AGCTGAAGACCCTCCGGCT 36359468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||| |||| |||||||| || || ||||| | Sbjct 36362593 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 36362652 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 36362653 TAGAAGCTTACATGACAATGAAGAT 36362677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547034508475520