Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq150 134 2e-27 seq103 123 4e-24 >seq150 Length=2801850 Score = 134 bits (148), Expect = 2e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | | | |||| ||||||||||| ||||| ||||| || || Sbjct 189492 GCCAAGCGCCACCGCAAAGTTTTGAGAGACAACATCCAAGGGATCACGAAGCCGGCAATT 189551 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 189552 CGGCGCCTTGCCCGGCGTGGAGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGACC 189611 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| | | |||||| | ||||| || ||| || ||| Sbjct 189612 CGGGGCGTGCTGAAGGTTTTCCTGGAAAACGTTATTCGGGATGCAGTCACCTACACTGAG 189671 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| | || ||||| |||| || || || Sbjct 189672 CACGCCAAGCGCAAGACGGTCACGGCTATGGACGTAGTGTATGCCCTGAAGCGACAGGGA 189731 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| | ||| Sbjct 189732 CGCACCCTGTATGGTTTCGGAGGCTAA 189758 >seq103 Length=7275287 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5836068 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5836009 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 5836008 CCGGCGGCTGGCCCGGCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 5835949 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 5835948 TCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 5835889 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 5835888 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 5835829 Query 16672 CCG 16674 ||| Sbjct 5835828 CCG 5835826 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 6089751 CGCTAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 6089693 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 6089692 TCCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 6089633 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 6089632 CCCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 6089573 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 6089572 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 6089513 Query 16671 GCCG 16674 |||| Sbjct 6089512 GCCG 6089509 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5827929 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5827988 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 5827989 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 5828048 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 5828049 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 5828108 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 5828109 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 5828168 Query 16672 CCG 16674 ||| Sbjct 5828169 CCG 5828171 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5900262 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5900321 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 5900322 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 5900381 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 5900382 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 5900441 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 5900442 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 5900501 Query 16672 CCG 16674 ||| Sbjct 5900502 CCG 5900504 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 6477802 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 6477861 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 6477862 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 6477921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 6477922 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 6477981 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 6477982 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 6478041 Query 16672 CCG 16674 ||| Sbjct 6478042 CCG 6478044 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7016992 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 7017051 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 7017052 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 7017111 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7017112 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 7017171 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 7017172 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 7017231 Query 16672 CCG 16674 ||| Sbjct 7017232 CCG 7017234 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7023215 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 7023156 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 7023155 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 7023096 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7023095 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 7023036 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 7023035 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 7022976 Query 16672 CCG 16674 ||| Sbjct 7022975 CCG 7022973 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7059968 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 7059909 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 7059908 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 7059849 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7059848 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 7059789 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 7059788 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 7059729 Query 16672 CCG 16674 ||| Sbjct 7059728 CCG 7059726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79029139956261