Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq53 95.1 1e-14 seq1 87.8 2e-12 >seq53 Length=17124947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 |||||||| ||||| | | ||| ||||||||| ||| || ||||| | | | | Sbjct 11555539 TAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACGT 11555480 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| || ||||| ||| || || |||||||| || |||||||| || || |||| Sbjct 11555479 TGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 11555420 Query 21248 ATAAAATCAAATGGATTTTC 21267 ||||||||||| |||||||| Sbjct 11555419 ATAAAATCAAAGGGATTTTC 11555400 >seq1 Length=84051066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| | Sbjct 77629329 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 77629388 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 77629389 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 77629448 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 77629449 CATAAAGTCAAATGGATTTTC 77629469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531565855417480