Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_007062.1 Length=41690 Score E Sequences producing significant alignments: (Bits) Value seq449 194 4e-45 >seq449 Length=32345 Score = 194 bits (214), Expect = 4e-45 Identities = 748/1152 (65%), Gaps = 41/1152 (4%) Strand=Plus/Plus Query 664 AACTGCTTTATAAACGATAAACCCAAAGTATTAATA-GCGAGTGGTGCAAAAAGGGCGGG 722 || ||| ||| || || || || || ||||||| || | ||| |||| || || || Sbjct 7911 AATTGCATTAGAAGAGAAAAGCCGAAGATATTAATTTGCTA-TGGAGCAATGAGAGCTGG 7969 Query 723 TAAAACATATGTGTTTATCC--TGCtttttttAATGCATATAGCTACTTATAAAGACAAG 780 ||||| ||||| |||||| ||||||||| | || ||||||| ||| ||| | Sbjct 7970 GAAAACTTATGT-TTTATCTATTGCTTTTTTATCT-CACATAGCTAAATATGAAGGTCAA 8027 Query 781 GGGCTTAACTTCATTATTGGAGGAGCAACACAGGCATCTATAAGACGTAACATACTAGAT 840 || || ||||| || |||||||| | || |||| | | || ||| || || Sbjct 8028 AATAAAAATTTTATTATCGGTGGAGCAACTTATGCGAATATATGGAGAAATATATTAAAT 8087 Query 841 GATATGGAGTTAATACTAGGTAG-AGAGTTAACACTCGATAAATCTAACGCAGTCAAAAT 899 ||| |||| | | || | | | | |||| ||| ||||| ||| | | | Sbjct 8088 GATTGGGAGACACTCTTAAGCATTAAAATTAA-ACTTCATAAAGATAATAGTTTTGATTT 8146 Query 900 ATTTGGTAATAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAAAAAAGCGCG 959 ||| || ||||| | |||||||| | ||| | || | | |||||||| || | Sbjct 8147 ATTCGGGAATAAGATTTATGTATTTGGTGGAGATAATGCCTCTTCATGGAAAGCAGTAAG 8206 Query 960 TGGTTTTACTTCAGCAGGTGCTTTTTTAAATGAGGGAACAGCATTACACAATATGTTTAT 1019 || || ||| | |||| || || | ||||| | |||||||||||| |||| ||| | Sbjct 8207 AGGATTCACTGCTACAGGAGCATTACTTAATGAAGCAACAGCATTACATAATACTTTTGT 8266 Query 1020 TAAAGAAGTGTTCT-CACGTTGTAGTCACAA--AGGCGCGAGAATATTAATTGATACAAA 1076 ||||||| ||| | | | ||| ||| | ||| || || | || ||||| || Sbjct 8267 TAAAGAA-TGTATTGCGAGATGT--TCAGATGCAGGAGCAGTTATTTATATGGATACTAA 8323 Query 1077 CCCCGAAAACCCAATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTGGTCAAC--GA 1134 ||| || || || | ||| ||||||| ||||| | ||||| || ||| || Sbjct 8324 CCCTGATAATCCTAGCCATTTTGTTAAAACTGATTATGTAGATAAATCAGG--AACTAGA 8381 Query 1135 TTATCGAATGGAAGACTAAATATCAAAGCATTTCAATTTACTTTGTTCGACAATACATTT 1194 || ||||||| ||||||| |||||||||| |||||||||| || |||| ||| Sbjct 8382 TTTAAAAATGGAAAGTTAAATATACAAGCATTTCATTTTACTTTGTATGATAATAATTTT 8441 Query 1195 TTAGATGAAGAATATATTGAATCGATTATAGCGAGT---ACACCAACAGGAATGTTCACA 1251 ||||||||||||||| |||| || ||||| | | || || | ||||||||| Sbjct 8442 TTAGATGAAGAATATGTTGA---GAGTATAGAAAATGCAACTCCGATAGGAATGTTTTTT 8498 Query 1252 GATCGTGACATTTATGGTAAGTGGGTTTCTGCTGAGGGTGTTGTATATAAAGATTTCAAA 1311 ||| | | ||| ||| || ||||| || | ||||| ||||| ||||||||||| || Sbjct 8499 GATAGAAATATTCTTGGAAAATGGGTATCACCCGAGGGAGTTGTGTATAAAGATTTTAAT 8558 Query 1312 GAAAAAGTTCATTACATCACAGAAGAAGAATTTAAAACTAAACAAATAAAAAGG-AAATA 1370 ||| ||| || || ||| || | ||| | |||||| || || | Sbjct 8559 ATAAATACACATGTGATAAC---TCTTCAATCTATTCCAAAAGATATAAAATGGTTAAGA 8615 Query 1371 T-----GCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATGGTTGTAGCGGAA 1425 | | || || |||||||| ||| |||| | || || || | || | ||||| Sbjct 8616 TTTTGGGGTGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACTATTTT--CGGAA 8673 Query 1426 --GACTTCGACGGAAACAAGTACGTTATTGAAGAACACGCACACAGACATAAAGAAATAG 1483 || || || | || | ||||||||||| || | | |||||||||||| Sbjct 8674 TGGATACAGATCATAATATCTATATGATTGAAGAACATACAAAGCAATATAAAGAAATAG 8733 Query 1484 ATGACTGGGTAGCTATTGCAAAAGGAGTTATAAAAAGGCATGGCGATATTCTTTTTTATT 1543 || ||||||| | || |||| ||||| | | |||| |||||| |||| | Sbjct 8734 ATTACTGGGTTAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATATTCAATTTTTTG 8793 Query 1544 GTGATACAGCTAGACCTGAACATATTGAACGATTTAGAAGAGAGAAG--ATAAAAGCAAG 1601 ||| |||| ||||| || ||| ||| || ||| || |||||| || ||| | Sbjct 8794 CAGATTCAGCAAGACCAGAGCATGTTGCTCGTTTT--AATCGAGAAGGTATTAAATGTAT 8851 Query 1602 ATATGCTGACAAAGCTGTTATTGCTGGCATTGAAGTTATTTCTAGGTTATTCAAGTTAAA 1661 | ||||| | ||| || | ||||| || ||||| |||| | | || || | | Sbjct 8852 AAATGCTAATAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACTTTTAAAAGTGAG 8911 Query 1662 TAAAATATCCATTATCAAAGAAAAAGTTAGTTTGTTTAAAGAAGAAATATACAACTACGT 1721 || ||| |||| |||||||| || | | | |||||| | || || || Sbjct 8912 GAAGCTATTTTTTATTAAAGAAAATATTGATAAGATACTTGAAGAATTTAACCTATATGT 8971 Query 1722 TTGGAAAGATAATGCAGACGAACCAGTTAAATTAAACGATGACACATTAGATGCGTTAAG 1781 |||||| || | | | |||||||| ||| ||| ||||| | ||||| | ||||| Sbjct 8972 TTGGAATGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTACTAGATTCATTAAG 9031 Query 1782 ATATGCAGTTTA 1793 ||||||| |||| Sbjct 9032 ATATGCAATTTA 9043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133206664493448