Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq51 91.5 1e-13 seq62 84.2 1e-11 seq8 82.4 5e-11 >seq51 Length=18513618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | || | |||| || |||||| |||||| || || ||||| |||||| Sbjct 16773831 CCTCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 16773890 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| |||||||| || | | || || || | |||| Sbjct 16773891 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16773950 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| ||||||| || || || | || || Sbjct 16773951 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 16774010 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||||||||| |||||||| ||||||||| Sbjct 16774011 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 16774058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || |||||| |||||| || || ||||| ||||||| || | || || Sbjct 16774989 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16775048 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| |||||||| || | | || || || | ||||| ||| ||||| ||| Sbjct 16775049 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGG 16775108 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||||| || || || | || || || | || || || || Sbjct 16775109 ATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16775168 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| |||||||| ||||||||| Sbjct 16775169 CCCGTCAAGGTCTTCACGAAGATCTGCATG 16775198 >seq62 Length=14533578 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||||| |||| || || || |||||| || || |||||||||| Sbjct 3815901 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 3815842 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || || | || Sbjct 3815841 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGG 3815782 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| ||||| ||| || || |||||| || | || || || | || | Sbjct 3815781 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCA 3815722 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| |||||||| |||||||| Sbjct 3815721 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815673 >seq8 Length=41820603 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||| ||||| ||||||| || |||||||| ||||| || ||||| || Sbjct 20930122 AAGCCTGTTCCCCTGGCTTTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 20930181 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||||| |||||||||||| ||| || Sbjct 20930182 TCATCTATTCATGCATGTCACTAATTAGGTGATGA 20930216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334741552572287