Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq51 113 4e-20 seq2 82.4 7e-11 >seq51 Length=18513618 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || |||||| | | Sbjct 16774057 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773998 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 16773997 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16773938 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16773937 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773878 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || |||||||| Sbjct 16773877 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGAGG 16773831 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || |||||| | | Sbjct 16773829 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773770 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| |||||||| || || || |||||||| Sbjct 16773769 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 16773710 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16773709 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773650 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 16773649 ATCCAGAAGGAGTCCACTCTGCA 16773627 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 16774285 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774226 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 16774225 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774166 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16774165 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774106 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || |||||||| Sbjct 16774105 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCCTCAGAGGAGG 16774059 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||| || || ||||||| | || |||||| | Sbjct 16775200 ACCATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 16775141 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | || || ||| || ||||| || || || |||||| Sbjct 16775140 AGTGACACCATCGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGAC 16775081 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||||||||| | ||||||| ||||| || || ||| Sbjct 16775080 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 16775021 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 16775020 AACATCCAGAAGGAGTCCACTCTGCA 16774995 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 16774513 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774454 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 16774453 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774394 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16774393 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774334 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 16774333 ATCCAGAAGGAGTCCACTCTGCA 16774311 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 16774741 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774682 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 16774681 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774622 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16774621 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774562 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 16774561 ATCCAGAAGGAGTCCACTCTGCA 16774539 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 16774969 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774910 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || |||||||| Sbjct 16774909 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774850 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| || || ||||| Sbjct 16774849 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774790 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 16774789 ATCCAGAAGGAGTCCACTCTGCA 16774767 >seq2 Length=60041133 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || ||||| |||| ||| || || ||||| | |||| || ||| | ||| Sbjct 38873998 GCAGATCTTTGTGGAGACCCTGATGGGCAAGACCATCTCCCTCGAGGTTGAGCCCAGTGA 38873939 Query 25061 CACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||| ||| |||| ||| || | ||| || || ||| | ||||||| Sbjct 38873938 CACTAGTGAGGATGTCA---AAGCCAAAGTCCAA-GCCAAGGAGGGCATTTCGCCTGACC 38873883 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||||||||||||||| | ||||||| ||||| || |||| Sbjct 38873882 AGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACA 38873823 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| ||||| ||| | || ||||| Sbjct 38873822 ATACCCAGAAAGAGTCCACCCTATACTTGGTGCT 38873789 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||| || ||||| |||| ||| || || ||||| | |||| || ||| | ||| Sbjct 38875380 GCAGATCTTTGTGGAGACCCTGATGGGCAAGACCATCTCCCTCGAGGTTGAGCCCAGTGA 38875321 Query 25061 CACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||| ||| |||| ||| || | ||| || || ||| | ||||||| Sbjct 38875320 CACTAGTGAGGATGTCA---AAGCCAAAGTCCAA-GCCAAGGAGGGCATTTCGCCTGACC 38875265 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||||||||||||||| | ||||||| ||||| || |||| Sbjct 38875264 AGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACA 38875205 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| ||||| ||| | || ||||| Sbjct 38875204 ATACCCAGAAAGAGTCCACCCTATACTTGGTGCT 38875171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433061949743255