Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2089 100 2e-16 seq109 100 2e-16 seq11 100 2e-16 seq51 95.1 1e-14 seq91 91.5 1e-13 seq62 89.7 4e-13 >seq2089 Length=2406 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | |||||||| |||| || || | || Sbjct 876 AGATGCAGATCTTTGTGAAGCCTCTGATGGGTAAAACTATCACCCTCACGGTCAAGCCCG 935 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||| | |||||||||||||| || ||||| | | Sbjct 936 GTGACACCACTGAGAATGTCAAAACCAAAGTCCAAGACAAGGAGGGCATCCCACCTCACC 995 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| ||||||||| | |||||| |||||| |||| | |||| Sbjct 996 AGCAGCGTCTAATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACA 1055 Query 22397 ACATTCAAAAAGAATCCACC 22416 | | || |||||||||||| Sbjct 1056 ATCTCCAGAAAGAATCCACC 1075 >seq109 Length=6837600 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | |||||||| |||| || || | || Sbjct 133451 AGATGCAGATCTTTGTGAAGCCTCTGATGGGTAAAACTATCACCCTCACGGTCAAGCCCG 133510 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||| | |||||||||||||| || ||||| | | Sbjct 133511 GTGACACCACTGAGAATGTCAAAACCAAAGTCCAAGACAAGGAGGGCATCCCACCTCACC 133570 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| ||||||||| | |||||| |||||| |||| | |||| Sbjct 133571 AGCAGCGTCTAATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACA 133630 Query 22397 ACATTCAAAAAGAATCCACC 22416 | | || |||||||||||| Sbjct 133631 ATCTCCAGAAAGAATCCACC 133650 >seq11 Length=36659245 Score = 100 bits (110), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || |||| ||||| || || |||| Sbjct 7976064 GATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAA 7976121 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| |||| | ||||| ||||| |||||||||||||| || || | || || Sbjct 7976122 TGATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCA 7976181 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || | || ||||||||| | ||||| || ||| |||| || ||||| Sbjct 7976182 ACGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAA 7976241 Query 22398 CATTCAAAAAGAATCCACC 22416 | || ||||| |||||| Sbjct 7976242 TACCCAGAAAGAGTCCACC 7976260 >seq51 Length=18513618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| ||| Sbjct 16774057 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773998 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 16773997 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16773938 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16773937 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773878 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16773877 ATCCAGAAGGAGTCCAC 16773861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| ||| Sbjct 16773829 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773770 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| ||||| || || || || || Sbjct 16773769 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 16773710 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16773709 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773650 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||| | || ||| Sbjct 16773649 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGGGGT 16773602 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 16774285 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774226 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 16774225 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774166 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16774165 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774106 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16774105 ATCCAGAAGGAGTCCAC 16774089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 16774513 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774454 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 16774453 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774394 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16774393 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774334 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16774333 ATCCAGAAGGAGTCCAC 16774317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 16774741 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774682 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 16774681 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774622 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16774621 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774562 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16774561 ATCCAGAAGGAGTCCAC 16774545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| ||| Sbjct 16775197 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16775138 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || || || ||||| || || || || || Sbjct 16775137 GACACCATCGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 16775078 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16775077 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16775018 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16775017 ATCCAGAAGGAGTCCAC 16775001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 16774969 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774910 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 16774909 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774850 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 16774849 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774790 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 16774789 ATCCAGAAGGAGTCCAC 16774773 >seq91 Length=9305606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||| |||||| ||||| | || || || || ||| | |||| || ||| || Sbjct 3698164 AAGATGCAACATTTTGTGAAAACCCTTACAGGAAAGACCCTCAGTGTTGAGGTCGAACCC 3698105 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || ||| ||| || |||| || ||||| | ||||| || ||| Sbjct 3698104 TCGGATACAATAGAAAGTATGAAAGCCAAGATTCGGGATAAGGAAGAAATTCCTCCTGAT 3698045 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || ||||| ||||| || | || ||| || || | || || ||| Sbjct 3698044 CAGCAGAGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3697985 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || ||||| Sbjct 3697984 AACATTCAAAAGGAGTCCAC 3697965 >seq62 Length=14533578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 22202 TTTATACATTT---GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 |||| || ||| || || |||||||| || || || || | ||||| || || ||| Sbjct 3815425 TTTAAACGTTTTAGGTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCA 3815484 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | || || ||||| ||| || ||| | || || | || || || || || |||| Sbjct 3815485 CCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGG 3815544 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 |||| || || || || || || | || || ||||| ||||| ||| | || ||| || Sbjct 3815545 AGGGCATCCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCC 3815604 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 |||| | || ||||||||||| || || || || ||| Sbjct 3815605 GCACTCTTTCTGATTACAACATCCAGAAGGAGTCGACC 3815642 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3815901 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3815960 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||| || || || || || || || || Sbjct 3815961 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816020 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | |||||| |||||| | || ||||||||| Sbjct 3816021 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 3816080 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 3816081 ATCCAGAAAGAGTCGACC 3816098 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3816129 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3816188 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||| || || || || || || || || Sbjct 3816189 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816248 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 3816249 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3816308 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||| ||||| | ||| | ||| Sbjct 3816309 ATCCAGAAAGAGTCCACTCTCCATCTGGTT 3816338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419470299731005