Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq62 104 2e-17 seq91 91.5 1e-13 >seq62 Length=14533578 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || ||| || || || || || Sbjct 3816097 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 3816038 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 3816037 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 3815978 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 3815977 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3815918 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3815917 TTCACGAAGATCTGCAT 3815901 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||| || ||||||||||| | ||| || |||||| Sbjct 3816338 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 3816279 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| ||||| ||||||||||| || Sbjct 3816278 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTG 3816219 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||| | |||||| ||| || || |||| ||| | || || Sbjct 3816218 GATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 3816159 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||| || || || || |||||||| Sbjct 3816158 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || ||| || || || || || Sbjct 3815869 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 3815810 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||| ||||| || ||||| || Sbjct 3815809 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 3815750 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 3815749 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3815690 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3815689 TTCACGAAGATCTGCAT 3815673 >seq91 Length=9305606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | || || || |||||||||||||| || Sbjct 3697938 ACCACCACAAAGTCTCAACA--AGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGA 3697993 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | || ||| || || ||||| Sbjct 3697994 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATCAGGAGG 3698053 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || |||||| ||| | ||| | || || | || |||||| Sbjct 3698054 AATTTCTTCCTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGAC 3698113 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | | || || || || || ||||| |||||| ||||| Sbjct 3698114 CTCAACACTGAGGGTCTTTCCTGTAAGGGTTTTCACAAAATGTTGCAT 3698161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419876450213724