Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_010147.1 Length=43011 Score E Sequences producing significant alignments: (Bits) Value seq449 188 2e-43 >seq449 Length=32345 Score = 188 bits (208), Expect = 2e-43 Identities = 753/1163 (65%), Gaps = 43/1163 (4%) Strand=Plus/Plus Query 17646 AGAAGTCTGGAACTGCTTCATAAACGATAAACCCAAAGTATTAATA-GCGAGTGGTGCGA 17704 |||||| | || ||| | | || || || || || ||||||| || | ||| || | Sbjct 7901 AGAAGTATTAAATTGCATTAGAAGAGAAAAGCCGAAGATATTAATTTGCTA-TGGAGCAA 7959 Query 17705 AGAGGGCAGGTAAAACATATGTATTTATCC--TGCtttttttAATGCACATAGCTACTTA 17762 ||| || || ||||| ||||| |||||| ||||||||| | |||||||||| || Sbjct 7960 TGAGAGCTGGGAAAACTTATGT-TTTATCTATTGCTTTTTTATCT-CACATAGCTAAATA 8017 Query 17763 TAAAGACAAGGGGCTTAACTTCATTATCGGAGGAGCGACACAAGCATCTATCAGACGTAA 17822 | ||| | || || |||||||| ||||| || | || ||| | | || Sbjct 8018 TGAAGGTCAAAATAAAAATTTTATTATCGGTGGAGCAACTTATGCGAATATATGGAGAAA 8077 Query 17823 CATACTAGATGATATGGAGTTAATACTAGGTAGAGAGTTGACACTTGATAAATCTAACGC 17882 ||| || ||||| |||| | | || | | | | | |||| ||||| ||| Sbjct 8078 TATATTAAATGATTGGGAGACACTCTTAAGCATTAAAATTAAACTTCATAAAGATAATAG 8137 Query 17883 AGTCAAAATATTTGGTAATAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAA 17942 | | |||| || ||||| | |||||||| | ||| | || | | ||||||| Sbjct 8138 TTTTGATTTATTCGGGAATAAGATTTATGTATTTGGTGGAGATAATGCCTCTTCATGGAA 8197 Query 17943 AAAAGCACGTGGTTTTACTTCAGCAGGTGCTTTTTTAAACGAGGGGACAGCATTACACAA 18002 | || | | || || ||| | |||| || || | || || | ||||||||||| || Sbjct 8198 AGCAGTAAGAGGATTCACTGCTACAGGAGCATTACTTAATGAAGCAACAGCATTACATAA 8257 Query 18003 TATGTTTATTAAAGAG-GTATTCTCACGTTGT--AGTTACAAAGGCGCGAGGATATTAAT 18059 || ||| ||||||| ||||| | | ||| || | || || || || | || Sbjct 8258 TACTTTTGTTAAAGAATGTATTGCGA-GATGTTCAGATGCA--GGAGCAGTTATTTATAT 8314 Query 18060 TGATACCAACCCCGAAAACCCGATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTGG 18119 ||||| ||||| || || || | ||| ||||||| ||||| | ||||| || Sbjct 8315 GGATACTAACCCTGATAATCCTAGCCATTTTGTTAAAACTGATTATGTAGATAAATCAGG 8374 Query 18120 TCAAC--GGTTATCGAATGGAAGACTAAATATCAAAGCATTCCAATTTACTTTGTTTGAC 18177 ||| | || ||||||| ||||||| ||||||| || |||||||||| ||| Sbjct 8375 --AACTAGATTTAAAAATGGAAAGTTAAATATACAAGCATTTCATTTTACTTTGTATGAT 8432 Query 18178 AATACATTTTTAGATGAAGAATATATTGAATCGATTATCGCAAGT---ACACCAACAGGA 18234 |||| |||||||||||||||||| |||| || ||| | || | || || | |||| Sbjct 8433 AATAATTTTTTAGATGAAGAATATGTTGA---GAGTATAGAAAATGCAACTCCGATAGGA 8489 Query 18235 ATGTTCACAGATCGTGATATTTATGGTAAGTGGGTTTCTGCTGAAGGTGTTGTATATaaa 18294 ||||| ||| | ||||| ||| || ||||| || | || || ||||| |||||| Sbjct 8490 ATGTTTTTTGATAGAAATATTCTTGGAAAATGGGTATCACCCGAGGGAGTTGTGTATAAA 8549 Query 18295 gatttcaaagaaaaagttcattacatcaaagaa--gaagaatttaaaactaaacaaataa 18352 ||||| || | || | | |||| | || ||| || | ||| | |||| Sbjct 8550 GATTTTAA--TATAAATAC---ACATGTGATAACTCTTCAATCTATTCCAAAAGATATAA 8604 Query 18353 aaagg-aaaTAT-----GCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATGG 18406 || || || || | || || |||||||| ||| |||| | || || || | Sbjct 8605 AATGGTTAAGATTTTGGGGTGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACTA 8664 Query 18407 TTGTAGCGGAA--GACTTTGACGGAAACAAGTACGTTATTGAAGAACACGCACACAGACA 18464 || | ||||| || || || | || | ||||||||||| || | | | Sbjct 8665 TTTT--CGGAATGGATACAGATCATAATATCTATATGATTGAAGAACATACAAAGCAATA 8722 Query 18465 TAAAGAGATAGATGACTGGGTAGCTATTGCTAAAGGAGTTATAAAAAGGCATGGCGATAT 18524 |||||| |||||| ||||||| | ||||||| ||||| | | |||| |||| Sbjct 8723 TAAAGAAATAGATTACTGGGTTAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATAT 8782 Query 18525 TCTTTTTTATTGTGATACAGCTAGACCTGAACATATTGAACGATTTAGAAGAGAGAAG-- 18582 || |||| | ||| |||| ||||| || ||| ||| || ||| || |||||| Sbjct 8783 TCAATTTTTTGCAGATTCAGCAAGACCAGAGCATGTTGCTCGTTTT--AATCGAGAAGGT 8840 Query 18583 ATAAAAGCAAGATATGCTGACAAAGCCGTTATTGCTGGCATTGAAGTTATTTCTAGGTTA 18642 || ||| | | ||||| | ||| || | ||||| || ||||| |||| | | Sbjct 8841 ATTAAATGTATAAATGCTAATAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACTT 8900 Query 18643 TTCAAGTTAAATAAAATATTCATTATCAAAGAAAAAGTTAGTTTGTTTAAAGAAGAAATA 18702 || || | | || |||| |||| |||||||| || | | | |||||| | Sbjct 8901 TTAAAAGTGAGGAAGCTATTTTTTATTAAAGAAAATATTGATAAGATACTTGAAGAATTT 8960 Query 18703 TACAACTACGTTTGGAAAGATAATGCAGACGAACCAGTTAAATTAAACGATGACACATTA 18762 || || |||||||| || | | | |||||||| ||| ||| ||||| | || Sbjct 8961 AACCTATATGTTTGGAATGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTACTA 9020 Query 18763 GATGCGTTAAGATATGCAGTTTA 18785 ||| | |||||||||||| |||| Sbjct 9021 GATTCATTAAGATATGCAATTTA 9043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137431335668802