Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq62 136 4e-27 seq13 87.8 2e-12 seq91 86.0 6e-12 >seq62 Length=14533578 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || ||||||||||| | | ||||| | || Sbjct 3816341 AAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 3816282 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||||||||| ||||| || |||||||| || Sbjct 3816281 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 3816222 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || |||| || ||||| || | || | ||| Sbjct 3816221 TTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 3816162 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 3816161 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | || || ||||||||||| Sbjct 3816097 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 3816038 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || |||||||| ||||| || || ||| Sbjct 3816037 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 3815978 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 3815977 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3815918 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3815917 TTCACGAAGATCTGCAT 3815901 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 3815641 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3815582 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || || || || || || || ||| Sbjct 3815581 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 3815522 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 3815521 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3815462 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 3815461 TTCACGAAGATTTGCATTTT 3815442 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| | || || ||||||||||| Sbjct 3815869 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 3815810 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 3815809 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 3815750 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 3815749 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3815690 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3815689 TTCACGAAGATCTGCAT 3815673 >seq13 Length=35234357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTT-GCC 64305 || ||| |||| || || ||||||| | | |||| ||||| ||| |||| ||| Sbjct 34732176 GTTGATCCTTTCTGGGTGCTGTAATCAGAG----TGCGGCTATCTTCCAGCAGCTTTGCC 34732121 Query 64306 GGCATAAA--TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||| ||| |||||| ||||||||| || || |||||||| ||||| || || || Sbjct 34732120 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTA-GC 34732062 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | || |||| || ||||| || | ||| ||||||||||| |||| Sbjct 34732061 TTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGACGGTCTTGCCAGTCAG 34732002 Query 64423 AGTTTTTACGAAAATTTGCAT 64443 || || | || || ||||| Sbjct 34732001 GGTCTTCGCAAACATCTGCAT 34731981 >seq91 Length=9305606 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || | ||||| Sbjct 3697955 ACAAGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 3698012 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || | | |||||| || ||||||||| |||| || || | Sbjct 3698013 AGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATCAGGAGGAATTTCTTCCTTATCCCG- 3698071 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| | | || | |||||| || || || || ||| | | |||||| Sbjct 3698072 AATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGAGGGTCTT 3698131 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||||| || ||| |||||| || Sbjct 3698132 TCCTGTAAGGGTTTTCACAAAATGTTGCATCTT 3698164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499330167423880