Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq51 111 1e-19 seq20960 89.7 5e-13 seq62 89.7 5e-13 >seq51 Length=18513618 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 16774071 CGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 16774130 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 16774131 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 16774190 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 16774191 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16774250 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || || || ||||||||| Sbjct 16774251 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 16774286 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| || Sbjct 16774317 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCCAGCTGTTTGCCG 16774376 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 16774377 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 16774436 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 16774437 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 16774496 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 16774497 TTCACGAAGATCTGCATG 16774514 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| || Sbjct 16774545 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 16774604 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 16774605 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 16774664 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 16774665 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 16774724 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 16774725 TTCACGAAGATCTGCATG 16774742 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| || Sbjct 16774773 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCCAGCTGTTTGCCG 16774832 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 16774833 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 16774892 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 16774893 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 16774952 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 16774953 TTCACGAAGATCTGCATG 16774970 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || |||||||| || Sbjct 16773861 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 16773920 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 16773921 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 16773980 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||| |||| || Sbjct 16773981 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 16774040 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 16774041 TTCACGAAGATCTGCATGCCT 16774061 >seq20960 Length=292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 124 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 183 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| ||||||||| Sbjct 184 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 243 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTC 127053 ||| || ||| |||| | |||| |||||| Sbjct 244 GATCTT-TGCTTTGACGTTCTCGATGGTGTC 273 >seq62 Length=14533578 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || |||||||| || || |||||||| | ||||| ||| || Sbjct 3816337 ACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 3816278 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || |||| | | |||||| || ||||| ||||| || || || | Sbjct 3816277 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGG 3816218 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | ||||| |||||| | ||| || || | ||| | || ||| Sbjct 3816217 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 3816158 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || || || |||||||| Sbjct 3816157 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 3815659 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 3815600 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || ||||||||||| Sbjct 3815599 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTA 3815540 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 3815539 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3815480 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || || ||||| Sbjct 3815479 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 3815445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 3815887 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 3815828 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || |||||||| || Sbjct 3815827 TCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTA 3815768 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| || || | ||| | Sbjct 3815767 TCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3815708 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 3815707 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || |||||||| | ||||| | Sbjct 3816115 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 3816056 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || ||||| ||||| || || Sbjct 3816055 TCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 3815996 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||| | |||||| | ||| || || | ||| | Sbjct 3815995 TCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3815936 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 3815935 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475201371202480