Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq244 178 5e-39 seq165 138 4e-27 seq91 107 8e-18 seq84 105 3e-17 seq9 104 9e-17 seq129 96.9 1e-14 seq99 93.3 2e-13 >seq244 Length=730160 Score = 178 bits (196), Expect = 5e-39 Identities = 459/694 (66%), Gaps = 13/694 (2%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || || || || ||||||| ||||| || || || | ||| | || || ||| Sbjct 346172 ATTGGCATCGACCTGGGCACCACCTACTCATGCGTGGGGGTGTTCCAGCACGGTAAGGTA 346231 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TTTAC 451032 || || || || |||||||| || || || || || || | || || || || Sbjct 346232 GAGATCATTGCCAATGACCAGGGCAACCGCACCACCCC--CA--GCTATGTGGCCTTCAC 346287 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | ||| | || || || | | | |||| ||| || | | Sbjct 346288 CGACACGGAACGGCTCATTGGGGATGCGGCCAAGAACCA-GGTAGCCATGAATCCCCAGA 346346 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| || | |||||| |||||| | |||||| | | | | ||||| | || || Sbjct 346347 ACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGCAGG 346406 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 ||| | ||| || ||| | | ||| | ||| || ||| |||||| | | || Sbjct 346407 CAGATATGAAACACTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAACAG 346466 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | || ||||| || | ||| |||| |||||| ||||| || |||||||| || | Sbjct 346467 TGTCCTACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTACTGA 346526 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || ||||| || || || || | | | || || || || |||| || || | Sbjct 346527 CAAAGATGAAGGAGACTGCTGAGGCCTTTTTGGGCCACCCTGTCACCAATGCTGTGATAA 346586 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 |||| || ||||||||||||||| | || || ||||| || || |||||||| |||| Sbjct 346587 CTGTGCCAGCTTATTTCAATGATTCTCAGCGTCAAGCCACCAAGGATGCAGGTGTGATTG 346646 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 | ||| | ||||| || ||||||| |||||||| ||||| ||||| | |||||||| Sbjct 346647 CGGGTCTGAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCATATGGCT 346706 Query 451452 TAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 ||| ||| | || | ||| | || | || | ||||| | |||||||||| Sbjct 346707 TAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGACCTGGGTGGAGGAA 346763 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 | |||| || | || | || || ||||| | |||||||||||||| || || Sbjct 346764 CATTTGATGTGTCCATCCTGACCATAGATGATGGAATCTTTGAAGTAAAGGCCACAGCTG 346823 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || || || || || || || || |||| || Sbjct 346824 GGGACACCCACCTTGGTGGAGAGGACTTTGACAA 346857 >seq165 Length=2285742 Score = 138 bits (152), Expect = 4e-27 Identities = 341/512 (67%), Gaps = 4/512 (1%) Strand=Plus/Plus Query 451981 TAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 ||||||| | || |||||||||||||| || |||||||| || || || | ||| || || Sbjct 2158527 TAAGAGCATCAACCCTGATGAAGCTGTCGCTTATGGTGCAGCTGTCCAGGTAGCCATCCT 2158586 Query 452041 AACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTAT 452099 | || || || |||||| | |||| | ||| | | || || || || || | Sbjct 2158587 TCCTGGAGACAAAT-CTGAAAATGTTCAAGATTTGCTGCTGTTGGAGGTCACTCCCCTTT 2158645 Query 452100 CTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTA 452159 ||||||| ||||||| ||||||||| | |||||| | | || || | || | | Sbjct 2158646 CTCTTGGCATTGAAACTGCTGGTGGAGTCATGACTTTTCTCATCAAGCACAATTCTACCA 2158705 Query 452160 TTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTA 452219 ||||| |||| ||| ||||| || | ||| ||| ||||| || ||||| | Sbjct 2158706 TTCCTACTAAACAGACCCAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCA 2158765 Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 ||| || | |||||| || ||||| ||||| ||||| || ||| || | ||| Sbjct 2158766 TTCGGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTACTTGGCAAGTTTG 2158825 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 || || ||| | |||| || || |||||| ||||| |||||| |||| Sbjct 2158826 AACTCACAGGCATACGTCCTGCCCCCCATGGCGTTCCTCAGATTGAGGTTACCTTTGATA 2158885 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA- 452398 ||||||| ||||| ||||| ||||| ||| || || || | |||||| |||| Sbjct 2158886 TTGATGCTAATGGCATTCTCAATGTCTCTGCTGTGGATAAGAGTACAGGAAAA-GAGAAT 2158944 Query 452399 AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || || || || || || | ||| || || || ||||| ||||| ||||| Sbjct 2158945 AAGATCACCATCACAAACAACAAAGGTCGCTTGAGCAAGGAAGACATTGAGCTCATGGTC 2159004 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| || || | ||| | || ||||| Sbjct 2159005 CAGGAAGCTGAGAAGTACAAAGCAGAAGATGA 2159036 Score = 120 bits (132), Expect = 1e-21 Identities = 453/701 (65%), Gaps = 26/701 (4%) Strand=Plus/Plus Query 450919 TGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTG---TTTACCAAAATGGAAATGT 450975 ||| |||| |||||| ||||||| || ||||| |||| | || || | ||||| || Sbjct 2157462 TGGCATTGGTCTTGGCACCACCTACTCTTGTGTGGGTGCCTTCTAGCACA--GGAAA-GT 2157518 Query 450976 AGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 ||||| || || ||||| || ||| |||| || || | ||| ||||| || Sbjct 2157519 GGAAATAATTGCCAATGATCAGGGAAACTGAACCACCCCAAGTTATGTAGCCTTTACTGA 2157578 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAAAAA 451092 | ||| || | | || | ||||| || ||||| | | || | || ||| || Sbjct 2157579 CACTGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCAA---CGAACCCCACCAA 2157635 Query 451093 CACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAA 451152 |||||| | |||||| ||||| | ||||| ||| | || |||| | ||| ||| Sbjct 2157636 CACAGTTTTTGATGCCAAACGCCTGATTGGGCGTGGATTCGACGATGCTGTTGTCCAATC 2157695 Query 451153 AGAGAAAAAATTCTTTTC--TTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 || | || || | | ||| || || ||| | || | |||| | | ||| Sbjct 2157696 TGATATGAAGCACTGGCCCCTCATGGTG--GTGAATGATGCTGGCAGGCCCAAGGTCCAA 2157753 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 ||| | || || || || || |||| ||| ||| || || | || ||||||||| | Sbjct 2157754 GTAGAATACAAGGGAGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGTTTTG 2157813 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || || || |||| |||| || |||| | ||||| |||| ||| | Sbjct 2157814 AC-AAGATAAAGGAAATCACAGAGGCTTACCTTGGGAAGACTGTTACCAATGCTGTAGTC 2157872 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || ||||| || |||| || | || || || |||||||| ||| |||| Sbjct 2157873 ACAGTACCTGCCTATTTTAACAATGCTCAGCATCAGGCTACCAAAGATGCTGGAACTATT 2157932 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAAC------CTACAGCAGCTGCTCTAGCA 451444 |||||| | ||||| ||| |||| || || | || | || || |||||| | || Sbjct 2157933 GCTGGTCTTAATGTACTTTGAATCATCAAAGTACAGCAGCCAACTGCTGCTGCTATTGCT 2157992 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| ||| ||| || | || |||| ||| | | | ||||| || || Sbjct 2157993 TATGGCTTAGAGAAA---AAGGTTGGAGCCGAAAGGAATGTGCTGATCTTTGACTTGGGA 2158049 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| |||| || | || | |||||||||||| | ||||| || || | Sbjct 2158050 GGTGGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGGATCTTTGAGGTCAAATCT 2158109 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| || || || |||| || ||||| |||| || Sbjct 2158110 ACTGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 2158150 >seq91 Length=9305606 Score = 107 bits (118), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 || ||||| || ||||| || || || || || | | | |||| || ||| | || ||| Sbjct 3698157 AACATTTT-GTGAAAACCCTTACAGGAAAGACCCTCAGTGTTGAGGTCGAACCCTCGGAT 3698099 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | || ||| ||| ||| || |||| |||||||||| ||||||||||||||| || Sbjct 3698098 ACAATAGAAAGTATGAAAGCCAAGATTCGGGATAAGGAAGAAATTCCTCCTGATCAGCAG 3698039 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 |||| || || | || || ||||| ||||||||| | |||||| | || || || ||| Sbjct 3698038 AGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 3697979 Query 391233 GATAAGGATGCAACACTTCA 391252 | ||||| | ||||||| Sbjct 3697978 CAAAAGGAGTC--CACTTCA 3697961 >seq84 Length=10011549 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 7640057 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 7640116 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 7640117 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 7640169 >seq9 Length=38035322 Score = 104 bits (114), Expect = 9e-17 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || |||||||| ||| || | || | || | Sbjct 24439479 TGCAATCTCTGGCACTAGGGGGTCATCTGGATTTGGATCA--CATAGCAGTGAACAAATG 24439536 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 24439537 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 24439596 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 24439597 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 24439656 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| ||||| | | Sbjct 24439657 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGA 24439716 Query 96287 TAGGG 96291 || || Sbjct 24439717 TATGG 24439721 >seq129 Length=4582268 Score = 96.9 bits (106), Expect = 1e-14 Identities = 261/398 (66%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||||| | || || || || |||| ||| ||| || || | || ||||||||| Sbjct 151021 CAAGTAGAATACAAGAAAGAGACCAAAAGTTTCTGTCCAGAGGAGGTGTCCTCTATGGTT 150962 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||||| ||||| |||| || |||| | ||||| |||| ||| Sbjct 150961 TTGACAAAGATGAAGGAAACCACAGAGGCTTACCTTGGGAAGACTGTTACCAATGCTGTA 150902 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || || || ||||| || | | || | | || || ||| |||| ||| || Sbjct 150901 GTCACAGTACCTGCCTATTTTAACAACTCTCAGCATTAGGCTACCAAACATGCTGGAAAT 150842 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | ||||| || ||||| || | ||| || || || |||||| | || ||| Sbjct 150841 ATTGCTGGTCTTAATGTACTACGAATCATCAGTGAGCCAACTGCTGCTGCTATTGCTTAT 150782 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| | || |||| ||| | | | ||||| || || || Sbjct 150781 GGCTTAGACAA---AAAGGTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTGGGAGGT 150725 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| |||| || | | | | |||||||||| | ||||| || ||| | | Sbjct 150724 GGCACTTTTGATGGGTCAATCCCCACTACTGAAGATGGGATCTTTGAGGTCAAGTCTGC- 150666 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || |||| || ||||| |||| || Sbjct 150665 --TGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 150630 >seq99 Length=7546736 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| || || || |||| |||| || ||||| | |||||||||||| Sbjct 1828641 GCCACTAAAGATGCTGGCCAGATATCTGGACTAAACGTGCTTCGGGTAATTAATGAACCT 1828582 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 1828581 ACAGCTGCTGCTCTGGCTTATGGTCTAGACAAATCAGAAGA 1828541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974443162062716