Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq51 120 2e-22 seq62 100 2e-16 seq2089 96.9 2e-15 seq109 96.9 2e-15 seq2 84.2 1e-11 >seq51 Length=18513618 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 16774059 CCTCCTCTGAGGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 16774118 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 16774119 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16774178 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| |||||| ||||| || || || | |||| || ||| | Sbjct 16774179 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 16774236 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || ||||| || |||||||| ||||||||||| Sbjct 16774237 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 16774285 Score = 118 bits (130), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 16774533 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16774592 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||||||||| Sbjct 16774593 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774652 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 16774653 ATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 16774710 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||| ||||||||||| Sbjct 16774711 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 16774741 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || | | | || |||| ||| Sbjct 16774761 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCC 16774820 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||||||||| Sbjct 16774821 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774880 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 16774881 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16774940 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| ||||||||||| Sbjct 16774941 CCCGTCAGGGTCTTCACGAAGATCTGCAT 16774969 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 16773603 CCCCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 16773662 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 16773663 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16773722 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| |||||| ||||| || || || | |||| || ||| | Sbjct 16773723 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 16773780 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 16773781 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 16773829 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 16773849 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16773908 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||||||||| Sbjct 16773909 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16773968 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 16773969 ATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 16774026 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | |||||||| ||||||||||| Sbjct 16774027 TGCCCGTCAAGGTCTTCACGAAGATCTGCAT 16774057 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || | | | || |||| ||| Sbjct 16774305 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCTTCC 16774364 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||||||||| Sbjct 16774365 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 16774424 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 16774425 ATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 16774482 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||| ||||||||||| Sbjct 16774483 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 16774513 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 16774989 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 16775048 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | ||||| || || Sbjct 16775049 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGG 16775108 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 16775109 ATCTTCCCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 16775166 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | |||||||| ||||||||||| Sbjct 16775167 TGCCCGTCAAGGTCTTCACGAAGATCTGCAT 16775197 >seq62 Length=14533578 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| || || ||| Sbjct 3815899 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 3815840 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | ||||||||| | || Sbjct 3815839 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3815780 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || ||||| || ||| | | || | |||| || ||| || Sbjct 3815779 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 3815720 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 3815719 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 3815672 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || |||||||| ||||| || || ||| Sbjct 3816127 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3816068 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 3816067 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 3816008 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || ||| | | || | |||| || ||| || Sbjct 3816007 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 3815948 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 3815947 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 3815900 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| || | ||| |||||||| ||||| || || ||| Sbjct 3816355 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 3816296 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 3816295 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 3816236 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || ||| | | || | |||| || ||| || Sbjct 3816235 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 3816176 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 3816175 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 3816128 >seq2089 Length=2406 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||| | | ||| ||||||||| | || ||| | || || | || |||| ||| Sbjct 1086 ACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCC 1027 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| ||||| || ||||||| | || | ||||||||||| Sbjct 1026 AGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTGG 967 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || | | ||||||| || || || ||| || |||| Sbjct 966 ACTTTGGTTTTGAC--ATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTT 909 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | |||| |||||||||||||||||| Sbjct 908 TACCCATCAGAGGCTTCACAAAGATCTGCAT 878 >seq109 Length=6837600 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||| | | ||| ||||||||| | || ||| | || || | || |||| ||| Sbjct 133661 ACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCC 133602 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| ||||| || ||||||| | || | ||||||||||| Sbjct 133601 AGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGATGCCCTCCTTGTCTTGG 133542 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | || |||||| || || | | ||||||| || || || ||| || |||| Sbjct 133541 ACTTTGGTTTTGAC--ATTCTCAGTGGTGTCACCGGGCTTGACCGTGAGGGTGATAGTTT 133484 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | |||| |||||||||||||||||| Sbjct 133483 TACCCATCAGAGGCTTCACAAAGATCTGCAT 133453 >seq2 Length=60041133 Score = 84.2 bits (92), Expect = 1e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| ||||||||||| |||||||| || || || |||||||| ||| | ||||||| Sbjct 38873844 CATCTTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGCGAAATGCCCTCCT 38873903 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGT 34942 || | | || |||||| || || | | |||| || |||||| |||| || Sbjct 38873904 TGGCTTGGACTTTGGCTTTGAC--ATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGA 38873961 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||||| || ||| | || |||| ||||||||||||| Sbjct 38873962 GATGGTCTTGCCCATCAGGGTCTCCACAAAGATCTGC 38873998 Score = 84.2 bits (92), Expect = 1e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| ||||||||||| |||||||| || || || |||||||| ||| | ||||||| Sbjct 38875226 CATCTTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGCGAAATGCCCTCCT 38875285 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGT 34942 || | | || |||||| || || | | |||| || |||||| |||| || Sbjct 38875286 TGGCTTGGACTTTGGCTTTGAC--ATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGA 38875343 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||||| || ||| | || |||| ||||||||||||| Sbjct 38875344 GATGGTCTTGCCCATCAGGGTCTCCACAAAGATCTGC 38875380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324434284810056