Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_017978.1 Length=33609 Score E Sequences producing significant alignments: (Bits) Value seq449 585 6e-163 >seq449 Length=32345 Score = 585 bits (648), Expect = 6e-163 Identities = 747/1025 (73%), Gaps = 8/1025 (1%) Strand=Plus/Plus Query 23717 TACATTATCAAACCTAGTACTTTTATTTCCACACTTATAAATACACATAAGTCTATTTAT 23776 |||| |||| | | ||||||||||| ||||| |||||| |||| | | ||| ||||| Sbjct 26440 TACAAAATCATATTTTGTACTTTTATTGCCACATTTATAAGTACATAATAATCTTTTTAT 26499 Query 23777 TCCTCTTGCTTTTCTCATAACCAtttttttACCACATATTCCACAGCTTATTATACCAGC 23836 |||||| | ||| || |||||| |||||||| ||||| || || || ||| || Sbjct 26500 ACCTCTTAATGATCTGTTAGTCATTTTATTACCACAAATTCCGCATTCTAATACACCTGC 26559 Query 23837 GAATGGATTAACAGGAGCATTAGAAAGTTGATAAGGAATATGATAGCGACCTTTTAAAAT 23896 |||| ||||||||||||||| | ||||||||| ||||| || | | ||||||| Sbjct 26560 GAATTCGTTAACAGGAGCATTAATCAATTGATAAGGGATATGGTATCTATTACTTAAAAT 26619 Query 23897 TTTTTGTGCTGATTCCCAAATTTCATTAGTTACTATACCAGGGTGTTTTCCATCTGCAAT 23956 ||||||||| |||||| | | ||| ||| | || ||||| | | || || Sbjct 26620 AGTTTGTGCTGCAGTAAAAATTTTTTCATTTATTATTGCTGGATGTTTGGCGTTAGCTAT 26679 Query 23957 AATCCATTCGGATTTATCTCGTGTTCTTGTATCTTTAACTTTACCTGGAGTTTTACTTTT 24016 ||||||||| |||||||| |||| ||||||||||| ||||||| |||| ||||||| Sbjct 26680 AATCCATTCACTTTTATCTCTAGTTCGTGTATCTTTAATTTTACCTATAGTTGTACTTTT 26739 Query 24017 CTTTATATCTTTTCGTTTCCATGGAATCTTACCGATATAAATTGGATTCTTTATTATAGT 24076 ||| | ||||| |||||| | || || || ||||||| ||| |||| |||| | Sbjct 26740 CTTGACCTCTTTCTTTTTCCACGATATTTTTCCTATATAAACACAATTTTTTAATATATT 26799 Query 24077 TAATACAGA---AGAGGGACTAAAGTTATTGCCTAATTTAGTTTTATATCTTAAGTTATT 24133 |||||||| ||| | |||| ||||| ||||||||||||||||| | | |||| Sbjct 26800 CAATACAGAGCTAGATG---TAAAATTATTTCCTAATTTAGTTTTATAGCCAAGACTATT 26856 Query 24134 AAGTTCATTAGCTATAGCACTAGCACCATTCCCTTCTATATAGAGTTTAAATATTAAATT 24193 | | | |||||| ||| || || | ||||| |||| ||| || | || Sbjct 26857 TAAATGTGTTGCTATATTCGTAGTTCCTGAACCATTGATATAAAGTTCAAAAATCATTTT 26916 Query 24194 TATTGCAGGAGCTTCATCTTCATTTATTTTTAAAGTTCTATTCTTTTTTATAAAACTAAT 24253 || ||||||||| ||||| ||||| ||||||||| || ||||||| ||| Sbjct 26917 TACAATTGGAGCTTCAGTATCATTAATTTTCAAAGTTCTAGATTTCCCTATAAAATGAAT 26976 Query 24254 ATCATACCCGTATGGAGGATTGGTAGCTATATAGTTACCTTCCTCAATTGAACGTATTCT 24313 |||||| || ||| ||||| || || ||||| ||||| || |||| | |||| Sbjct 26977 ATCATAACCAAGTGGTGGATTTGTTGCGATATAATTACCATCTTCAACACTTCTAGTTCT 27036 Query 24314 CCCACCTTGCATTCTTCTATTTATTGTCTTTAATTCTCTTCTACTAAAGAAAGTTTTAAA 24373 ||||||||||||||||| || || | || | ||| | | || | || | || ||| Sbjct 27037 TCCACCTTGCATTCTTCTGTTAATCATTTTAAGCTCTTTACGGCTCATAAATGCTTCAAA 27096 Query 24374 TTCTGT-TATCTCTTCATCCATTTCATTGTCTAGATCATATGTCTTTAATGGAGTTATAA 24432 |||||| ||| ||||| || |||||||| | ||| ||||| || || ||||||||||| Sbjct 27097 TTCTGTATAT-TCTTCGTCAATTTCATTATTTAGGTCATAGGTTTTGTTTGGAGTTATAA 27155 Query 24433 TTTTTGTTTTACTCTCTTTAAATGCATCTAAAATAATTCCCTGATCTTTCATTCCGCCAC 24492 |||| ||| |||| | |||||| | | ||| |||| || || || | ||| | |||| Sbjct 27156 TTTTCGTTCTACTATTTTTAAAAGTTTTTAATATAACACCTTGGTCCTGCATATCACCAC 27215 Query 24493 GACCAAGTCTATCTATATCCATTACTAATACACCATAATACATATTGTTTTCTACTTCTT 24552 | || || | | || ||||| || |||||||||| ||| || | ||| ||||||| Sbjct 27216 GTCCTAGACGTTGCATGTCCATAACCAATACACCATCATAACGTTTTTCTTCCACTTCTT 27275 Query 24553 TTAAAAGTTCTAACATTTTAGGTCGAAAAAATAAACTATCTCCAGATACAATTTCTTCTT 24612 |||||| |||| ||||||||||| ||| |||||| | ||||| |||||||||||||||| Sbjct 27276 GTAAAAGCTCTAGCATTTTAGGTCTAAATAATAAATTTTCTCCTGATACAATTTCTTCTT 27335 Query 24613 TTATATCAGTTACATTTAATTTATTTTCTTTAGCAAATTTCAAAAGAGCATTACGGTGTT 24672 | || ||| | ||| || || | ||||||||||||| |||||||| || | || | Sbjct 27336 TAATTTCAACAATATTAAAGTTTTGAGCTTTAGCAAATTTTAAAAGAGCTTTTCTATGCT 27395 Query 24673 TTGAAAGAGTTTCCCCTTCTCCTAATGTTTTTTCAAGTTCTTCATCAGCTCTAGACTTTC 24732 | || |||||||||||||| |||||||||||||| | ||||||||||||||| || |||| Sbjct 27396 TAGAGAGAGTTTCCCCTTCACCTAATGTTTTTTCCATTTCTTCATCAGCTCTTGATTTTC 27455 Query 24733 TTAAA 24737 ||||| Sbjct 27456 TTAAA 27460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107362934161854