Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_018264.1 Length=41938 Score E Sequences producing significant alignments: (Bits) Value seq449 268 2e-67 >seq449 Length=32345 Score = 268 bits (296), Expect = 2e-67 Identities = 361/502 (72%), Gaps = 3/502 (1%) Strand=Plus/Minus Query 40370 TAATGAATCGTGTATGTATTTATCTTAGGAAGTCCCGAGCAGACGAAGAAATAGAAAAAG 40429 |||||||| |||||||||||| | || || || |||| || |||||||| |||||| Sbjct 27479 TAATGAAT---GTATGTATTTATTTAAGAAAATCAAGAGCTGATGAAGAAATGGAAAAAA 27423 Query 40430 AGCTTGGACAAGGAGAAACACTCGCAAAACATCGTAAGGCCCTTCTTAAATTTGCAAAAG 40489 | || |||| ||||| ||| | || ||| | || || ||| | |||||||| |||| Sbjct 27422 CATTAGGTGAAGGGGAAACTCTCTCTAAGCATAGAAAAGCTCTTTTAAAATTTGCTAAAG 27363 Query 40490 AGAAAAATTTGAACATAGTAAAAATCAGAGAGGAAATAGTATCAGGCGAAAGCCTTATCC 40549 |||| || || || || |||| | ||| ||||| |||||||| |||| | | Sbjct 27362 CTCAAAACTTTAATATTGTTGAAATTAAAGAAGAAATTGTATCAGGAGAAAATTTATTAT 27303 Query 40550 ATAGACCTGAAATGTTGGAATTACTAAAAGAAGTCGAACAAGGCATGTACGATGCTGTAT 40609 ||||||| ||||| | || | || ||||||| ||| || || |||| ||||| Sbjct 27302 TTAGACCTAAAATGCTAGAGCTTTTACAAGAAGTGGAAGAAAAACGTTATGATGGTGTAT 27243 Query 40610 TATGTATGGATCTACAGCGTTTAGGGCGTGGCAACATGCAGGAACAAGGTCTCATTTTAG 40669 | |||||| | || ||| |||| ||||| | |||||||| |||||| | || ||| Sbjct 27242 TGGTTATGGACATGCAACGTCTAGGACGTGGTGATATGCAGGACCAAGGTGTTATATTAA 27183 Query 40670 AAGCCTTTAAAAAGTCAAACACTAAAATTATAACGCTTCAAAAAACTTATGATTTGAACA 40729 || | |||||||| | || ||||||||||| | | ||||| ||||| | || | Sbjct 27182 AAACTTTTAAAAATAGTAGAACGAAAATTATAACTCCAAACAAAACCTATGACCTAAATA 27123 Query 40730 ATGATTTTGACGAAGAATATAGCGAATTTGAAGCATTTATGAGCCGAAAGGAACTTAAAA 40789 |||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||| Sbjct 27122 ATGAAATTGACGAAGAATATACAGAATTTGAAGCATTTATGAGCCGTAAAGAGCTTAAAA 27063 Query 40790 TGATAAATAGAAGGCTACAAGGTGGCAGAGTACGCTCTATTCAGGAAGGTAATTATTTAT 40849 |||| || ||||| | |||||||| ||| | | || | || ||||||||| | Sbjct 27062 TGATTAACAGAAGAATGCAAGGTGGAAGAACTAGAAGTGTTGAAGATGGTAATTATATCG 27003 Query 40850 CACCATTGCCACCTTATGGTTA 40871 || || ||||| |||||| Sbjct 27002 CAACAAATCCACCACTTGGTTA 26981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133999789740600