Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq62 113 4e-20 seq51 84.2 2e-11 >seq62 Length=14533578 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | ||| || || || ||||| || || |||||||| | Sbjct 3816355 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 3816296 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 3816295 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 3816236 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||| || || || || |||| | |||||| | ||||| Sbjct 3816235 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 3816176 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || |||||||| Sbjct 3816175 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3816129 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 3816103 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGC 3816044 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||||||||||||||| || || Sbjct 3816043 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTG 3815984 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | |||||| | ||||| || || |||| || |||||||| Sbjct 3815983 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3815924 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 3815923 AGGGTCTTCACGAAGATCTGCAT 3815901 >seq51 Length=18513618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | |||| |||| || Sbjct 16774995 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 16775054 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || ||||| ||||| || || || || Sbjct 16775055 TTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGGATCTTC 16775114 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 16775115 CCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 16775174 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 || || || || || ||||||||||| Sbjct 16775175 AAGGTCTTCACGAAGATCTGCATGGT 16775200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396035097074589