Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq51 86.0 5e-12 >seq51 Length=18513618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| ||| || || || ||||| ||||| Sbjct 16774970 GCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 16775029 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| ||| || |||||||| |||| | ||| || || | ||| Sbjct 16775030 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 16775089 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| || || ||||| ||| ||| | | | || | |||||| Sbjct 16775090 GATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 16775149 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 ||||| || || || || |||||||| || || || || |||||||| || ||| Sbjct 16775150 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGGTCTGT 16775204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380703715860771