Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq111 161 2e-34 seq69 136 7e-27 seq18 91.5 3e-13 seq17 84.2 4e-11 >seq111 Length=6607727 Score = 161 bits (178), Expect = 2e-34 Identities = 184/245 (75%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| |||||| || |||||||| | Sbjct 1975053 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTAAGCTGGGCCACTT 1975110 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | || || | ||||| || ||||| || | |||||| ||||| Sbjct 1975111 GTTCCCGAAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCA 1975170 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1975171 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 1975230 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| | Sbjct 1975231 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGG 1975290 Query 241623 GAGAC 241627 | ||| Sbjct 1975291 GGGAC 1975295 >seq69 Length=12658979 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 3005033 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 3005092 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||| ||||||||||| || |||| |||||| ||||| Sbjct 3005093 TCCGTGTTCTGGCTCTTGAGCGTCTTGACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 3005152 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| || | ||| || | |||||| || || | ||| || |||||||| Sbjct 3005153 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 3005212 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 3005213 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 3005245 >seq18 Length=30197870 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 1319345 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 1319404 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 1319405 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 1319463 Query 213647 GGAC 213650 ||| Sbjct 1319464 AGAC 1319467 >seq17 Length=30241141 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 17357794 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 17357735 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| | ||||| |||||||||| Sbjct 17357734 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCTCTCCTGCGACTCCATGTCG 17357675 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 17357674 ATGGGGGAC 17357666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930946202151680