Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq43 383 2e-101 seq16 196 6e-45 seq9 107 2e-18 >seq43 Length=20825300 Score = 383 bits (424), Expect = 2e-101 Identities = 692/1001 (69%), Gaps = 13/1001 (1%) Strand=Plus/Plus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | |||| |||||||| || |||| ||| |||| ||| || | ||||| ||| Sbjct 3633877 CAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGT 3633936 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||| ||||| | ||| |||| ||||||| || ||| || | Sbjct 3633937 GTCAAACTTGTTGGCAAACAAGTGGTG--CTTTC-GTAGCATCCAGTTCAAGTCACCTGC 3633993 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||||| || || || ||||| | ||| || ||| |||| |||||||| | || || || Sbjct 3633994 TCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCTT 3634053 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || |||||||| ||||||||||||| || ||||| || ||||| |||||||| || Sbjct 3634054 GGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAGA 3634113 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 |||| || || | | |||| | | || || || |||| || | ||| | || Sbjct 3634114 CATGTCATACTTCTGGCTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATAGT 3634173 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||| || | || || || ||||| ||||| || | ||| ||||| |||| ||| Sbjct 3634174 GGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGGAT 3634233 Query 160397 -TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | | || | || || | || || || | || |||||||| || |||| Sbjct 3634234 CTTTTCATTCTCT-AGCACATAGCGCACATACTTCCTACTGACCACAAAGTAGGCACTGC 3634292 Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACC 160514 | ||||| | || | | ||| || ||| ||| |||| || ||||| | || | Sbjct 3634293 CCGAGAACAAGGGCGTTTCAAGAGGAGG-GTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 3634351 Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT 160574 ||| || || | | || |||| |||||||| | | |||| | |||||| | Sbjct 3634352 TTTCCATTAACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATTCTC 3634411 Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 || | |||||| ||||| |||| | |||||| |||| | ||| ||||| ||||| Sbjct 3634412 TCGGACTCTAGGCTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTG 3634471 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG 160694 || || | || || || | ||||| | ||||||| |||| |||| | || |||| Sbjct 3634472 GTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACTCATC 3634531 Query 160695 TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754 || ||||| |||||| || | || ||||| || || ||||| || || ||||| Sbjct 3634532 CGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACC 3634591 Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC 160814 |||||||| || | ||||||||| ||||||||| ||| || || |||| |||| |||| Sbjct 3634592 ACGTTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACC 3634651 Query 160815 GC---CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 || || |||| | ||| | | | |||| ||||||||| | ||| || || |||||| Sbjct 3634652 GCGGCCAAAAAGGA-ATCCTCT--GATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGA 3634708 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 ||| ||||||||||| || | ||| || | ||| || || || ||||| | ||| ||| Sbjct 3634709 GGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATA 3634768 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGC 160991 || || || || |||||||| | ||| || ||| |||| | | | || || ||| Sbjct 3634769 GAATATGCAATGGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGC 3634828 Query 160992 GTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| ||| ||| ||||| | |||||||| ||||| Sbjct 3634829 CTCTTGACGAAAGAATTGCAATCTCTGGTCATGTTTATATA 3634869 >seq16 Length=32833667 Score = 196 bits (216), Expect = 6e-45 Identities = 236/320 (74%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | |||||| || ||||| || || || || || |||||||||||| || Sbjct 16014141 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 16014082 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||||||||| || || | |||||||| ||| || Sbjct 16014081 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGAGTTCC 16014022 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 16014021 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 16013962 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || |||| ||||| || |||||||| || || |||| Sbjct 16013961 CTGAAGGTGACCATGTTTTCTAGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 16013902 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || | ||| | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 16013901 ACTTCCT---CGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCT 16013845 Query 168450 CGCTCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 16013844 TCTTCATCTTGGGTCACCAC 16013825 >seq9 Length=38035322 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | || |||| || |||| |||||| | ||||| || |||| | || | Sbjct 20111129 AGATATTTTGCGAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 20111070 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | || || | | ||| Sbjct 20111069 GGAATATAATTCTCATAATTTTCCCTAGACGGCCCCAGAACAACAGGGACAGAGCCGGCT 20111010 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 20111009 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAC 20110950 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 20110949 AGATAAAATTTGCA 20110936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576855717854520