Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq91 87.8 3e-12 seq62 86.0 1e-11 >seq91 Length=9305606 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | ||| || || ||||| || || || Sbjct 3697979 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACT 3698038 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| ||| |||| ||||| | || |||| ||| ||| || || || Sbjct 3698039 CTGCTGATCAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCTTTCATACTTTCTATTGT 3698098 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || || || | | | | || || ||||| || ||||| ||||| ||| Sbjct 3698099 ATCCGAGGGTTCGACCTCAACACTGAGGGTCTTTCCTGTAAGGGTTTTCACAAAATGTTG 3698158 Query 193358 CATTTT 193363 ||| || Sbjct 3698159 CATCTT 3698164 >seq62 Length=14533578 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| || || ||||| |||| || | |||||| || || || || Sbjct 3816130 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 3816071 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || |||||| Sbjct 3816070 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 3816011 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| || | ||| ||| || || | ||| Sbjct 3816010 GGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCC 3815951 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || || ||||| Sbjct 3815950 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3815901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899087876378640