Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq62 87.8 4e-12 seq91 86.0 1e-11 >seq62 Length=14533578 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | ||| | ||| | |||||| ||| || |||||||| Sbjct 3816355 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 3816296 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 3816295 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 3816236 Query 192430 ATTCCTTCTTTATCTTGTATTTT 192452 || |||||||||||||| || || Sbjct 3816235 ATGCCTTCTTTATCTTGGATCTT 3816213 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | || | |||||| ||| || |||||| Sbjct 3816130 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 3816071 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 3816070 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 3816011 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||||||||| || || Sbjct 3816010 GGGATGCCTTCTTTATCTTGGATCTT 3815985 >seq91 Length=9305606 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 192338 AAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTA 192396 |||| | ||| ||| || || || || ||||| || || ||| |||| |||| ||| || Sbjct 3697963 AAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTG 3698021 Query 192397 CCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 ||||||||||| || ||||| |||||||| || ||| |||| ||||| | || || | Sbjct 3698022 CCAGCAAAGATCAAACTCTGCTGATCAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCT 3698081 Query 192457 TTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 || | | | ||| | ||| || | ||| || || | | | | ||| || || || | Sbjct 3698082 TTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGAGGGTCTTTCCTGTAAGG 3698141 Query 192517 GTTTTAATAAA 192527 ||||| | ||| Sbjct 3698142 GTTTTCACAAA 3698152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983844562153950