Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq62 104 7e-17 seq14 84.2 6e-11 >seq62 Length=14533578 Score = 104 bits (114), Expect = 7e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || ||| || || || || || || || || | ||||| ||||| ||||| Sbjct 11633285 ACCAGTCTCAGCTGTCTTGACGGCGGTGTCGATGAGCCCCTCGCGACCCCCCATGGCATG 11633344 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| ||||| || || Sbjct 11633345 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCTCGGC 11633403 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||||||| | |||| |||| | ||||| |||||||||| || || ||||| | | Sbjct 11633404 TCTCGGGCCCGTAGTCGTCCTTGATGAAGTGGGGCAGGGTCCGGTGCTTGAAGCCGAACG 11633463 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 11633464 GGATCCGCTTGCCCTCTACGTTCTGCTGCCC 11633494 >seq14 Length=35124889 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||| | ||| | | ||| ||||| || |||||| Sbjct 25689048 GCTTCACCTGAGGACATTAAAAAGTCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 25688989 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 25688988 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 25688929 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 ||| | || ||||||| |||||| Sbjct 25688928 GAAGTATTATCAAATAATGAAAAA 25688905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470867607511049