Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_021863.1 Length=42652 Score E Sequences producing significant alignments: (Bits) Value seq449 199 1e-46 >seq449 Length=32345 Score = 199 bits (220), Expect = 1e-46 Identities = 755/1162 (65%), Gaps = 41/1162 (4%) Strand=Plus/Plus Query 17185 AGAAGTCTGGAACTGCTTTATAAACGATAAACCCAAAGTATTAATA-GCGAGTGGTGCAA 17243 |||||| | || ||| ||| || || || || || ||||||| || | ||| |||| Sbjct 7901 AGAAGTATTAAATTGCATTAGAAGAGAAAAGCCGAAGATATTAATTTGCTA-TGGAGCAA 7959 Query 17244 AAAGGGCAGGTAAAACATATGTGTTCATCC--TGCtttttttAATGCATATAGCTACTTA 17301 || || || ||||| ||||| || ||| ||||||||| | || ||||||| || Sbjct 7960 TGAGAGCTGGGAAAACTTATGTTTT-ATCTATTGCTTTTTTATCT-CACATAGCTAAATA 8017 Query 17302 TAAAGACAAGGGGCTTAACTTCATTATTGGAGGAGCAACACAAGCATCTATAAGACGTAA 17361 | ||| | || || ||||| || |||||||| | || |||| | | || Sbjct 8018 TGAAGGTCAAAATAAAAATTTTATTATCGGTGGAGCAACTTATGCGAATATATGGAGAAA 8077 Query 17362 CATACTAGATGATATGGAGTTAATACTAGGTAG-AGAGTTAACACTCGACAAATCTAACG 17420 ||| || ||||| |||| | | || | | | | |||| ||| | ||| ||| Sbjct 8078 TATATTAAATGATTGGGAGACACTCTTAAGCATTAAAATTAA-ACTTCATAAAGATAATA 8136 Query 17421 CAGTCAAAATATTCGGTAATAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGA 17480 | | ||||||| ||||| | |||||||| | ||| | || | | |||||| Sbjct 8137 GTTTTGATTTATTCGGGAATAAGATTTATGTATTTGGTGGAGATAATGCCTCTTCATGGA 8196 Query 17481 AAAAAGCGCGTGGTTTTACTTCAGCAGGTGCTTTTTTAAATGAGGGAACAGCATTACACA 17540 || || | || || ||| | |||| || || | ||||| | |||||||||||| | Sbjct 8197 AAGCAGTAAGAGGATTCACTGCTACAGGAGCATTACTTAATGAAGCAACAGCATTACATA 8256 Query 17541 ATATGTTTATTAAAGAAGTGT-TCTCACGTTGT--AGTTACAAAGGCGCGAGAATATTAA 17597 ||| ||| |||||||| ||| | | | ||| || | | ||| || || | | Sbjct 8257 ATACTTTTGTTAAAGAA-TGTATTGCGAGATGTTCAGATGC--AGGAGCAGTTATTTATA 8313 Query 17598 TTGATACAAACCCCGAAAACCCAATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTG 17657 | ||||| ||||| || || || | ||| ||||||| ||||| | ||||| | Sbjct 8314 TGGATACTAACCCTGATAATCCTAGCCATTTTGTTAAAACTGATTATGTAGATAAATCAG 8373 Query 17658 GTCAAC--GATTATCGAATGGAAGACTAAATATCAAAGCATTTCAATTTACTTTGTTCGA 17715 | ||| |||| ||||||| ||||||| |||||||||| |||||||||| || Sbjct 8374 G--AACTAGATTTAAAAATGGAAAGTTAAATATACAAGCATTTCATTTTACTTTGTATGA 8431 Query 17716 CAATACATTTTTAGATGAAGAATATATTGAATCGATTATAGCGAGT---ACACCAACAGG 17772 |||| |||||||||||||||||| |||| || ||||| | | || || | ||| Sbjct 8432 TAATAATTTTTTAGATGAAGAATATGTTGA---GAGTATAGAAAATGCAACTCCGATAGG 8488 Query 17773 AATGTTCACAGATCGTGACATTTATGGTAAGTGGGTTTCTGCTGAGGGTGTTGTATATAA 17832 |||||| ||| | | ||| ||| || ||||| || | ||||| ||||| ||||| Sbjct 8489 AATGTTTTTTGATAGAAATATTCTTGGAAAATGGGTATCACCCGAGGGAGTTGTGTATAA 8548 Query 17833 AGATTTCAAAGAAAAAGTTCATTACATCACAGAAGAAGAATTTAAAACTAAACAAATAAA 17892 |||||| || ||| ||| || || ||| || | ||| | ||||| Sbjct 8549 AGATTTTAATATAAATACACATGTGATAAC---TCTTCAATCTATTCCAAAAGATATAAA 8605 Query 17893 AAGG-AAATAT-----GCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATGGT 17946 | || || || | || || |||||||| ||| |||| | || || || | | Sbjct 8606 ATGGTTAAGATTTTGGGGTGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACTAT 8665 Query 17947 TGTAGCGGAA--GACTTCGACGGAAACAAGTACGTTATTGAAGAACACGCACACAGACAT 18004 | | ||||| || || || | || | ||||||||||| || | | || Sbjct 8666 TTT--CGGAATGGATACAGATCATAATATCTATATGATTGAAGAACATACAAAGCAATAT 8723 Query 18005 AAAGAAATAGATGACTGGGTAGCTATTGCAAAAGGAGTTATAAAAAGGCATGGCGATATT 18064 |||||||||||| ||||||| | || |||| ||||| | | |||| ||||| Sbjct 8724 AAAGAAATAGATTACTGGGTTAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATATT 8783 Query 18065 CTTTTTTATTGTGATACAGCTAGACCTGAACATATTGAACGATTTAGAAGAGAGAAG--A 18122 | |||| | ||| |||| ||||| || ||| ||| || ||| || |||||| | Sbjct 8784 CAATTTTTTGCAGATTCAGCAAGACCAGAGCATGTTGCTCGTTTT--AATCGAGAAGGTA 8841 Query 18123 TAAAAGCAAGATATGCTGACAAAGCTGTTATTGCTGGCATTGAAGTTATTTCTAGGTTAT 18182 | ||| | | ||||| | ||| || | ||||| || ||||| |||| | | | Sbjct 8842 TTAAATGTATAAATGCTAATAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACTTT 8901 Query 18183 TCAAGTTAAATAAAATATTCATTATCAAAGAAAAAGTTAGTTTGTTTAAAGAAGAAATAT 18242 | || | | || |||| |||| |||||||| || | | | |||||| | Sbjct 8902 TAAAAGTGAGGAAGCTATTTTTTATTAAAGAAAATATTGATAAGATACTTGAAGAATTTA 8961 Query 18243 ACAACTACGTTTGGAAAGATAATGCAGACGAACCAGTTAAATTAAACGATGACACATTAG 18302 || || |||||||| || | | | |||||||| ||| ||| ||||| | ||| Sbjct 8962 ACCTATATGTTTGGAATGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTACTAG 9021 Query 18303 ATGCGTTAAGATATGCAGTTTA 18324 || | |||||||||||| |||| Sbjct 9022 ATTCATTAAGATATGCAATTTA 9043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136283222911836