Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq51 113 4e-20 seq62 109 5e-19 seq20960 96.9 3e-15 seq91 84.2 2e-11 >seq51 Length=18513618 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| Sbjct 16773829 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773770 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || || Sbjct 16773769 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 16773710 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16773709 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773650 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| ||| | || || Sbjct 16773649 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGGGG 16773603 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 16774285 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774226 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 16774225 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774166 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16774165 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774106 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| |||| | | |||||| Sbjct 16774105 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCCTCAGAGGAGGC 16774058 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 16774513 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774454 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 16774453 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16774393 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774334 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 16774333 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16774305 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 16774741 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774682 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 16774681 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774622 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16774621 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16774562 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 16774561 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16774533 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 16774969 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16774910 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 16774909 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16774850 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16774849 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 16774790 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 16774789 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16774761 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || || || || || || || || || || || Sbjct 16775200 ACCATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 16775141 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || ||| |||||||| || ||||| || || || || || Sbjct 16775140 AGTGACACCATCGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGAC 16775081 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||||||| ||||||||||| ||| | | | | |||| || || Sbjct 16775080 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 16775021 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||| |||| Sbjct 16775020 AACATCCAGAAGGAGTCCACTCTGCACCTGGT 16774989 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| Sbjct 16774057 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16773998 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 16773997 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 16773938 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 16773937 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 16773878 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 16773877 ATCCAGAAGGAGTCCACTCTGCACCTGGT 16773849 >seq62 Length=14533578 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 3815901 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3815960 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| |||||||| || ||||| || || Sbjct 3815961 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816020 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||||||| | | | || ||||| ||| Sbjct 3816021 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 3816080 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || ||||| || ||| |||| |||| Sbjct 3816081 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCG 3816115 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 3815673 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3815732 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || ||||| || || || || || || Sbjct 3815733 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAG 3815792 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||||||| | | | || ||||| ||| Sbjct 3815793 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 3815852 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| ||||| || ||| |||| |||| Sbjct 3815853 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCG 3815887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 3816129 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3816188 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| |||||||| || ||||| || || Sbjct 3816189 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 3816248 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 3816249 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3816308 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || || |||| Sbjct 3816309 ATCCAGAAAGAGTCCACTCTCCATCTGGT 3816337 >seq20960 Length=292 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24746 CTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAA 24805 || || || || ||| ||||| | || | || ||| ||||||||| ||||| ||| Sbjct 291 CTTGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAA 232 Query 24806 GGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA 24865 || || ||||| || || || | |||||||||||||| || |||||||| ||| | | Sbjct 231 GGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGC 172 Query 24866 AACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | | |||| || || ||||| || || || || || || ||| ||||| Sbjct 171 ACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTG 124 >seq91 Length=9305606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772 ||| | ||||| || || || || || | | | || || ||| || | || ||| || Sbjct 3698152 TTTGTGAAAACCCTTACAGGAAAGACCCTCAGTGTTGAGGTCGAACCCTCGGATACAATA 3698093 Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 |||| | ||| ||||| | || || |||| ||| ||||| ||||| || ||||| Sbjct 3698092 GAAAGTATGAAAGCCAAGATTCGGGATAAGGAAGAAATTCCTCCTGATCAGCAGAGTTTG 3698033 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 |||||||| || || || ||||| ||| | | |||| || || |||||||||||| Sbjct 3698032 ATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAG 3697973 Query 24893 GAATCGACACTACA-CTTGGTG 24913 || || |||| || |||| || Sbjct 3697972 GAGTC--CACTTCATCTTGTTG 3697953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449614293857560