Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq51 122 7e-23 seq91 87.8 1e-12 >seq51 Length=18513618 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||| ||||| |||| || || ||||| || || || ||||| || || | Sbjct 16773603 CCCCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 16773662 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||| ||| | ||||| || ||||| || || || Sbjct 16773663 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16773722 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || |||||| | || | |||||| | || || Sbjct 16773723 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 16773782 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || || || |||||||| Sbjct 16773783 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 16773829 >seq91 Length=9305606 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||| || ||||||||||| || || | | || || ||| || ||||| Sbjct 3697960 ATGAAG--TGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 3698017 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | ||||| || |||||||| || ||||| | || || || | ||| | Sbjct 3698018 CTTGCCAGCAAAGATCAAACTCTGCTGATCAGGAGGAATTTCTTCCTTATCCCG-AATCT 3698076 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| | | |||||| || || || |||| || |||| | | | || || || | Sbjct 3698077 TGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGAGGGTCTTTCCTG 3698136 Query 29762 TTAAGGTTTTAACAAA 29777 | | |||||| ||||| Sbjct 3698137 TAAGGGTTTTCACAAA 3698152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384982687088157