Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_023500.1 Length=43301 Score E Sequences producing significant alignments: (Bits) Value seq449 196 1e-45 >seq449 Length=32345 Score = 196 bits (216), Expect = 1e-45 Identities = 759/1165 (65%), Gaps = 47/1165 (4%) Strand=Plus/Plus Query 16431 AGAAGTCTGGAACTGCTTTATAAATGATAGACCTAAAGTATTAATA-GCGAGTGGTGCGA 16489 |||||| | || ||| ||| || || | || || ||||||| || | ||| || | Sbjct 7901 AGAAGTATTAAATTGCATTAGAAGAGAAAAGCCGAAGATATTAATTTGCTA-TGGAGCAA 7959 Query 16490 AGAGGGCAGGTAAAACGTATGTATTTATCC--TGCtttttttAATGCACATAGCTACTTA 16547 ||| || || ||||| ||||| |||||| ||||||||| | |||||||||| || Sbjct 7960 TGAGAGCTGGGAAAACTTATGT-TTTATCTATTGCTTTTTTATCT-CACATAGCTAAATA 8017 Query 16548 TAAAGACAAGGGGCTTAACTTCATTATTGGAGGAGCAACACAAGCATCTATAAGACGTAA 16607 | ||| | || || ||||| || |||||||| | || |||| | | || Sbjct 8018 TGAAGGTCAAAATAAAAATTTTATTATCGGTGGAGCAACTTATGCGAATATATGGAGAAA 8077 Query 16608 CATACTAGATGATATGGAGTTAATACTAGGTAG-AGAGTTAACACTTGATAAATCTAACG 16666 ||| || ||||| |||| | | || | | | | |||| |||| ||||| ||| Sbjct 8078 TATATTAAATGATTGGGAGACACTCTTAAGCATTAAAATTAA-ACTTCATAAAGATAATA 8136 Query 16667 CAGTCAAAATATTTGGTAATAAAGTGTATGTATTCGACGGTCAAAACTCGGATGCATGGA 16726 | | |||| || ||||| | |||||||| | || | || | | |||||| Sbjct 8137 GTTTTGATTTATTCGGGAATAAGATTTATGTATTTGGTGGAGATAATGCCTCTTCATGGA 8196 Query 16727 AAAAAGCGCGTGGTTTTACTTCAGCAGGTGCTTTTTTAAACGAGGGAACAGCATTACACA 16786 || || | || || ||| | |||| || || | || || | |||||||||||| | Sbjct 8197 AAGCAGTAAGAGGATTCACTGCTACAGGAGCATTACTTAATGAAGCAACAGCATTACATA 8256 Query 16787 ATATGTTTATTAAAGAA-GTATTCTCGCGTTGT--AGTTACAAAGGCGCGAGGATACTAA 16843 ||| ||| |||||||| ||||| || | ||| || | || || || || | Sbjct 8257 ATACTTTTGTTAAAGAATGTATTG-CGAGATGTTCAGATGCA--GGAGCAGTTATTTATA 8313 Query 16844 TTGATACCAACCCCGAAAACCCAATGCATCCGGTTAAAAAGGATTACATTGATAAGAGTG 16903 | ||||| ||||| || || || | ||| ||||||| ||||| | ||||| | Sbjct 8314 TGGATACTAACCCTGATAATCCTAGCCATTTTGTTAAAACTGATTATGTAGATAAATCAG 8373 Query 16904 GTCAAC--GGTTATCGAATGGAAGACTAAATATCAAAGCATTCCAATTTACTTTGTTTGA 16961 | ||| | || ||||||| ||||||| ||||||| || |||||||||| ||| Sbjct 8374 G--AACTAGATTTAAAAATGGAAAGTTAAATATACAAGCATTTCATTTTACTTTGTATGA 8431 Query 16962 CAATACATTTTTAGATGAAGAATATATTGAATCGATTATCGCAAGT---ACACCAACAGG 17018 |||| |||||||||||||||||| |||| || ||| | || | || || | ||| Sbjct 8432 TAATAATTTTTTAGATGAAGAATATGTTGA---GAGTATAGAAAATGCAACTCCGATAGG 8488 Query 17019 AATGTTCACAGATCGTGATATTTATGGTAAGTGGGTTTCTGCTGAAGGTGTTGTATATaa 17078 |||||| ||| | ||||| ||| || ||||| || | || || ||||| ||||| Sbjct 8489 AATGTTTTTTGATAGAAATATTCTTGGAAAATGGGTATCACCCGAGGGAGTTGTGTATAA 8548 Query 17079 agatttcaaagaaaaagttcattacatcaaagaa--gaagaatttaaaactaaacaaata 17136 |||||| || | || | | |||| | || ||| || | ||| | ||| Sbjct 8549 AGATTTTAA--TATAAATAC---ACATGTGATAACTCTTCAATCTATTCCAAAAGATATA 8603 Query 17137 aaaagg-aaaTAT-----GCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATG 17190 ||| || || || | || || |||||||| ||| |||| | || || || | Sbjct 8604 AAATGGTTAAGATTTTGGGGTGGAGTGGACTGGGGTTATCAGCACAAAGGCTCAATAACT 8663 Query 17191 GTTGTAGCGGAA--GACTTCGACGGAAACAAGTACGTTATTGAAGAACACGCACACAGAC 17248 || | ||||| || || || | || | ||||||||||| || | | Sbjct 8664 ATTTT--CGGAATGGATACAGATCATAATATCTATATGATTGAAGAACATACAAAGCAAT 8721 Query 17249 ACAAAGAAATAGATGACTGGGTAGCTATTGCTAAAGGAGTTATAAAAAGGCATGGCGATA 17308 | |||||||||||| ||||||| | ||||||| ||||| | | |||| ||| Sbjct 8722 ATAAAGAAATAGATTACTGGGTTAAAGTAGCTAAAGATTTTATATCTAAGTATGGTAATA 8781 Query 17309 TTCTTTTTTATTGTGATACAGCTAGACCTGAACATATTGAACGATTTAGAAGAGAGAAG- 17367 ||| |||| | ||| |||| ||||| || ||| ||| || ||| || |||||| Sbjct 8782 TTCAATTTTTTGCAGATTCAGCAAGACCAGAGCATGTTGCTCGTTTT--AATCGAGAAGG 8839 Query 17368 -ATAAAAGCAAGATATGCTGACAAAGCTGTTATTGCTGGCATTGAAGTTATTTCTAGGTT 17426 || ||| | | ||||| | ||| || | ||||| || ||||| |||| | | Sbjct 8840 TATTAAATGTATAAATGCTAATAAAAAAGTATTAGCTGGTATAGAAGTAGTTTCCAAACT 8899 Query 17427 ATTCAAGCTAAATAAAATGTTCATTATTAAAGAAAAAGTTAGCTTATTTA-AAGAAGAAA 17485 || || | | || | || ||||||||||||| || | | | || |||||| Sbjct 8900 TTTAAAAGTGAGGAAGCTATTTTTTATTAAAGAAAATATT-GATAAGATACTTGAAGAAT 8958 Query 17486 TCTACAACTACGTTTGGAAAGATAATGCGGACGAACCAGTTAAATTAAACGATGACACAT 17545 | || || |||||||| || | | | |||||||| ||| ||| ||||| | Sbjct 8959 TTAACCTATATGTTTGGAATGAAACAACTGGAGAACCAGTAAAACAAAATGATGATGTAC 9018 Query 17546 TAGATGCGTTAAGATATGCAGTTTA 17570 ||||| | |||||||||||| |||| Sbjct 9019 TAGATTCATTAAGATATGCAATTTA 9043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138358780514262