Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq51 116 3e-21 >seq51 Length=18513618 Score = 116 bits (128), Expect = 3e-21 Identities = 179/253 (71%), Gaps = 23/253 (9%) Strand=Plus/Plus Query 1525 GGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGG 1584 |||||||||| |||||| |||||||||||| || | |||| | |||||||||| Sbjct 14367748 GGCAACAGCTTCTAGAGCTAGATGTGCTCGCCATGGCCTCTGGGAGAT--ATATAAAGGG 14367805 Query 1585 CTAGTTGTAAGG---AGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG--- 1638 | |||||| ||| | |||| | || || ||||||| || ||| ||||| ||||| Sbjct 14367806 CCAGTTGTGAGGGAAAAGAGCGATCAACGTCCCGCCCATGGCAAAATCATTGCTCAGCTT 14367865 Query 1639 --------AAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAA 1689 |||||| |||||| || |||| || ||| | ||||| | || ||| Sbjct 14367866 TTCTCCAGAAAACACTTTCAATATTCTGCCCCACGAGGCTGGGTGAAAGCGGGACTGGAA 14367925 Query 1690 GGAAATG---AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCG 1746 ||||||| | |||||||| ||| ||||||||||| |||| || | || | |||||| | Sbjct 14367926 GGAAATGCTGAGGTTACCCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACACAG 14367985 Query 1747 G---GCACCCACA 1756 | |||| |||| Sbjct 14367986 GAAAGCACACACA 14367998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438283833286000