Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq51 145 1e-29 seq20960 116 7e-21 seq91 107 4e-18 seq131 105 1e-17 seq14 104 5e-17 seq11 91.5 3e-13 seq9 86.0 1e-11 >seq51 Length=18513618 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || ||||| ||||| || | ||||||||| || || ||||| || || || ||||| Sbjct 16773602 ACCCCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 16773661 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 16773662 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 16773721 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || || || ||||| || || ||||| || || || ||| | || || || Sbjct 16773722 GATGCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 16773781 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||||||||| ||||| || || |||||||| Sbjct 16773782 CTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 16773829 >seq20960 Length=292 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || || | |||||| ||||| |||||||| || || || ||||| Sbjct 107 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 166 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || ||||| |||||||| | || || || || ||||| Sbjct 167 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 226 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||||||||| || || || || || ||| | || || || Sbjct 227 ATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 286 Query 82764 TC 82765 || Sbjct 287 TC 288 >seq91 Length=9305606 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || || || || || || ||||| | | | | || ||||| ||||| || || Sbjct 3697964 AGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCC 3698023 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| | || || ||||| ||||| ||| |||||||||| ||||||| ||||| Sbjct 3698024 AGCAAAGATCAAACTCTGCTGATCAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCTTT 3698083 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 | | |||| || ||||| ||||| || || | | | | ||||| ||||| | || Sbjct 3698084 CATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGAGGGTCTTTCCTGTAAGGGT 3698143 Query 82793 CTTTACAAA 82801 || ||||| Sbjct 3698144 TTTCACAAA 3698152 >seq131 Length=4233177 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || | ||||||| | | || ||||| ||||| Sbjct 287690 TGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGTTGC 287749 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | || ||||| ||||| || ||||| ||||| |||||| |||||| |||||||| Sbjct 287750 TTGCGAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATCTTG 287809 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || ||||||||||| || ||||| ||||| || || | ||| || |||| Sbjct 287810 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGATCTT 287862 >seq14 Length=35124889 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || ||||| ||||| ||||| || ||||| |||| |||||||||||| Sbjct 11055722 TCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCCTTA 11055781 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || ||||||||||| || |||| ||||| | || |||| || Sbjct 11055782 TCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCAAGTGATA 11055841 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || | || || || | | |||||||| Sbjct 11055842 ATCTTCCCCATAAAAGTTTTCATGGAAATCTGCAT 11055876 >seq11 Length=36659245 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || |||||||| |||| || || || | | | ||||| || || ||||| || Sbjct 7976259 GTGGACTCTTTCTGGGTATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCCC 7976200 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || | || || | |||| || | || || || ||||| ||||| || || ||||| Sbjct 7976199 ACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 7976140 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || |||||||| | || || || | || || |||||||| || |||| Sbjct 7976139 ACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTC 7976082 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||||||||| Sbjct 7976081 TTCACAAATATCTGCAT 7976065 >seq9 Length=38035322 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | || || || || || || ||||| || || ||| Sbjct 5129798 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 5129739 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| | Sbjct 5129738 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 5129679 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | ||||| || |||| Sbjct 5129678 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 5129642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981193474417803