Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq62 145 7e-30 seq11 96.9 3e-15 seq2 93.3 4e-14 seq14 89.7 5e-13 seq20960 87.8 2e-12 seq160 82.4 7e-11 seq18 82.4 7e-11 >seq62 Length=14533578 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | ||||| |||||||||| Sbjct 3816098 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 3816040 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| |||||||||||||| || || |||||| || Sbjct 3816039 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCT 3815980 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 3815979 TCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 3815920 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 3815919 TCTTCACGAAGATCTGCAT 3815901 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 3816325 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 3816267 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 3816266 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTT 3816207 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 3816206 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 3816147 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3816146 CTTCACGAAGATCTGCAT 3816129 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | ||||| |||||||||| Sbjct 3815870 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 3815812 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 3815811 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 3815752 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 3815751 TCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 3815692 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 3815691 TCTTCACGAAGATCTGCAT 3815673 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 3815642 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 3815584 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 3815583 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 3815524 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 3815523 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 3815464 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 3815463 TCTTCACGAAGATTTGCAT 3815445 >seq11 Length=36659245 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| ||||||| || | ||| |||||| ||||| ||||| Sbjct 7976260 GGTGGACTCTTTCTGGGTATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCC 7976201 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | | |||| || ||| | ||||| | |||||||| |||||||| ||| ||| || | Sbjct 7976200 CACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 7976142 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| || ||| | || || ||| ||| ||||| | ||||| ||| ||||| || | Sbjct 7976141 TGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CG 7976084 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 7976083 TCTTCACAAATATCTGCAT 7976065 >seq2 Length=60041133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 38873800 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 38873859 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || ||||||||||| || | ||||| |||||| | || |||| | Sbjct 38873860 GCCGGCAAAAATCAGACGCTGCTGGTCAGGCGAAATGCCCTCCTTGGC-TTGGACTTTGG 38873918 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 38873919 CTTTGACATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 38873978 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 38873979 GGGTCTCCACAAAGATCTGC 38873998 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 38875182 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 38875241 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || ||||||||||| || | ||||| |||||| | || |||| | Sbjct 38875242 GCCGGCAAAAATCAGACGCTGCTGGTCAGGCGAAATGCCCTCCTTGGC-TTGGACTTTGG 38875300 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 38875301 CTTTGACATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 38875360 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 38875361 GGGTCTCCACAAAGATCTGC 38875380 >seq14 Length=35124889 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | || |||| ||||| ||| Sbjct 6335227 GGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCAG-CCTCCAGCTGTTTGT 6335169 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| |||| | |||||||| | || ||| |||| || ||||| ||| || | Sbjct 6335168 CCGCAAAAATCGGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTTGACTT 6335109 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| |||||| || || | |||| || |||||| |||| | Sbjct 6335108 TGACGTTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTGGTGGCTTTGCCCATCAGGG 6335049 Query 133642 TTTTTACGAAAATCTG 133657 | || || || ||||| Sbjct 6335048 TCTTCACAAAGATCTG 6335033 >seq20960 Length=292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| || || ||| | || || |||||||| || Sbjct 136 GGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCC 195 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| ||||| |||||||||||||| ||||||| || Sbjct 196 GGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCTTT 255 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 || | ||| | ||||| ||||||| || || Sbjct 256 GACGTTCTCGATGGTGTCACTGGGCTCGACCTC 288 >seq160 Length=2410589 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| |||| ||| || | | | ||||| ||| Sbjct 2160473 AAGTGCAGGGTGGACTCTTTCTGGATATGGTAGTCTGAGAGAATTCAGCCATCCTCCAGC 2160414 Query 133515 TG-CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||| || | |||| || |||||||||| || ||||||| |||| ||| ||| Sbjct 2160413 TGTTTTGTCCACAAAAATCAGATGCTGCTGGTCAGGGAGGATGCCCTCCTCGTCTTGGAT 2160354 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | |||| ||||| ||||||| || | || ||||| |||||||| Sbjct 2160353 -TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTTGAGGGTGATGGTTTTGC 2160295 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGC 133658 | |||| || || | || ||||| Sbjct 2160294 CCATCAGGGTCTTCAGAAAGCTCTGC 2160269 >seq18 Length=30197870 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 1319348 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 1319407 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 1319408 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 1319445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483116383879480