Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq43 324 2e-83 seq16 212 7e-50 seq8 86.0 7e-12 >seq43 Length=20825300 Score = 324 bits (358), Expect = 2e-83 Identities = 634/929 (68%), Gaps = 11/929 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| || || || |||| ||| || | |||||||| || || | ||| ||| Sbjct 3633876 CCAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 3633935 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| ||| | | ||||| || | || || | Sbjct 3633936 TGTCAAACTTGTTGGCAAACAAGTGGTGCT--TTCGT-AGCATCCAGTTCAAGTCACCTG 3633992 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||||||| || |||||||| ||||| || ||||||| | Sbjct 3633993 CTCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCT 3634052 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| |||||||| | ||| || |||||||| | Sbjct 3634053 TGGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAG 3634112 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | ||||| | | Sbjct 3634113 ACATGTCATACTTCTGG-CTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATA 3634171 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || |||||||| || || || || | ||||||||| |||| | | Sbjct 3634172 GTGGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGG 3634231 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | | ||| || | ||| | || || || ||| | || | |||||| || || Sbjct 3634232 ATCTTTTCATTCTCTAGCACATAGCGCACATACTTCCTACTGACCACAAAGTAGGCACTG 3634291 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || || |||| ||| | | ||||||| || |||||| ||||||||| | | Sbjct 3634292 CCCGAGAACAAGGGCGTTTCAAGAGGAGGGTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 3634351 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | || || || ||| ||||||| | | || ||| | | Sbjct 3634352 TTTCCATTAACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATTCTC 3634411 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 |||| |||||| ||||| |||| || | || |||| || || ||||| || ||| Sbjct 3634412 TCGGACTCTAGGCTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTG 3634471 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || |||| || || || ||||||| ||||| || | || |||| | | || | Sbjct 3634472 GTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACTCATC 3634531 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | ||| || || || | ||||| || |||||||| || |||||||| || || ||||| Sbjct 3634532 CGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACC 3634591 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC- 162836 ||| |||||| | | |||| || ||||| || ||| || || | || |||||||| Sbjct 3634592 ACGTTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACC 3634651 Query 162837 --GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 ||||| || | ||| || | ||| || || ||||| | |||||| ||||||||| Sbjct 3634652 GCGGCCAAAAAGGA-ATCC--TCTGATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGA 3634708 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || |||||||||||||| | || || | ||| || || || || || ||||| ||| Sbjct 3634709 GGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATA 3634768 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || ||||| ||||| ||||| || Sbjct 3634769 GAATATGCAATGGGAAACTCTGCCTCTTC 3634797 >seq16 Length=32833667 Score = 212 bits (234), Expect = 7e-50 Identities = 237/317 (75%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171776 AGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACACATA 171835 || || || |||| || || || || || ||||| ||||||||||| || | ||| | Sbjct 16014141 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 16014082 Query 171836 AAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAGTCCG 171895 |||| ||||| ||||||| |||||| ||||| || || | || || || ||||| | Sbjct 16014081 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGAGTTCC 16014022 Query 171896 AGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATTCTCG 171955 || || || ||||| | | |||||| || | ||||||||| ||||| || || |||| | Sbjct 16014021 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 16013962 Query 171956 CTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTATTAAA 172015 ||||| ||| |||||||||| |||| |||||| || |||||||| || || || || Sbjct 16013961 CTGAAGGTGACCATGTTTTCTAGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 16013902 Query 172016 ACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTCCCTT 172075 ||||| | | |||| |||||||||||||| |||||||||||||||| | || | Sbjct 16013901 ACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCTTCT 16013842 Query 172076 TCGTCTTGCGTTACCAC 172092 || ||||| || ||||| Sbjct 16013841 TCATCTTGGGTCACCAC 16013825 Score = 114 bits (126), Expect = 1e-20 Identities = 176/249 (71%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564 |||||| |||| | || | |||||||| ||||| || | ||| || ||||||| | Sbjct 16017539 AGTTTGCCTGACGCTGGTCATAGTCCCCAGGTGTAGCACCTGGCAGATTACCTCCT---T 16017483 Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624 ||||| || || || || ||||| || || || | || || ||||| || ||||| || Sbjct 16017482 CCCCACCTGGCTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATT 16017423 Query 171625 ACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 | ||| |||| | | |||||| ||||| ||||| || || | || ||||| | Sbjct 16017422 GGGGTGTGAGAGAA---TCTCAGTACTGTTTTCAATTCCTGACCCAGAGACCTTCCAGGA 16017366 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||| | ||| | ||||||||||| || |||| |||||||| || Sbjct 16017365 GATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTACGTGGTCTTCGAAAAA 16017306 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 16017305 TTTATAGTG 16017297 >seq8 Length=41820603 Score = 86.0 bits (94), Expect = 7e-12 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 17812393 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTATTTAGTAAGTATTTC 17812452 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||| | || | | || || | | ||||||||| || ||||| || | Sbjct 17812453 CA--TGGCACTGGGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 17812510 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 17812511 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTGGGAAGCATG 17812570 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | |||| ||| ||||| | Sbjct 17812571 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAT 17812628 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | || ||||| || || | ||||| || Sbjct 17812629 GCAGTATATGTTCTGAGGGGCATACACAGCTCGGAGCAATCTTTCAAAGTTTTCTATTTT 17812688 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| || || || || || ||||| || Sbjct 17812689 CTCATGGACCACCATTGAGTAGGCAATAGGGAAGTC 17812724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578067754139200