Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq62 104 6e-17 seq20960 95.1 3e-14 seq91 87.8 4e-12 >seq62 Length=14533578 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 3816144 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAC 3816203 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| || || || ||||| Sbjct 3816204 GTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTT 3816263 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 3816264 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 3816323 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 3816324 ACTCTCCATCTGGTT 3816338 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| | ||| Sbjct 3815916 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAAAAC 3815975 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| || || || ||||| Sbjct 3815976 GTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTT 3816035 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| | | ||||||||| ||||||||||||| Sbjct 3816036 GCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 3816095 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 3816096 ACCCTGCACCTGGT 3816109 >seq20960 Length=292 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 |||||||| ||| || || || ||||| ||| || ||| || || | ||||| || Sbjct 255 AAAGCAAA-GATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGC 197 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||||||| |||||||||| | || || | || |||||| |||||||||||||||| Sbjct 196 CGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTAC 137 Query 206367 TCTTCACCTTGT 206378 || ||||| || Sbjct 136 CCTGCACCTGGT 125 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || |||||||||||||||| || ||||||| || || | ||||||||| Sbjct 125 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 184 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 |||||||||||||| ||||| Sbjct 185 AGCTGCTTTCCGGCAAAGAT 204 >seq91 Length=9305606 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/215 (71%), Gaps = 11/215 (5%) Strand=Plus/Minus Query 206178 ATTTTGC-AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAG 206236 |||||| ||||| || |||||||| || ||| | | || || ||| || || ||| Sbjct 3698154 ATTTTGTGAAAACCCTTACAGGAAAGACCCTCAGTGTTGAGGTCGAACCCTCGGATACAA 3698095 Query 206237 TCGAATCAGTA---AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA 206293 | ||| |||| |||| || ||||| || || |||| |||| || || || | Sbjct 3698094 TAGAA--AGTATGAAAGCCAA-GATTCGGGATAAGGAAGAAATTCCTCCTGATCAGCAGA 3698038 Query 206294 GACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCC 206353 | | ||||| || || ||||| ||||||||||| | |||||| | || |||||| | | Sbjct 3698037 GTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTC 3697978 Query 206354 AGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 | || ||||| | ||||| |||| ||||||||| Sbjct 3697977 AAAAGGAGTC--CACTTCATCTTG--TTGAGACTT 3697947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181057987486217